Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LUC7L (LUC7 like)

Identity

Alias_namesLUC7 (S. cerevisiae)-like
LUC7-like (S. cerevisiae)
LUC7-like
Alias_symbol (synonym)LUC7B1
hLuc7B1
Luc7
Other aliasSR+89
HGNC (Hugo) LUC7L
LocusID (NCBI) 55692
Atlas_Id 68698
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 188969 and ends at 229482 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
COL1A1 (17q21.33) / LUC7L (16p13.3)CREBBP (16p13.3) / LUC7L (16p13.3)FAM234A (16p13.3) / LUC7L (16p13.3)
GSN (9q33.2) / LUC7L (16p13.3)ITM2A (Xq21.1) / LUC7L (16p13.3)LUC7L (16p13.3) / AXIN1 (16p13.3)
LUC7L (16p13.3) / HOOK2 (19p13.2)LUC7L (16p13.3) / LUC7L (16p13.3)LUC7L (16p13.3) / YME1L1 (10p12.1)
MAGED1 (Xp11.22) / LUC7L (16p13.3)NPRL3 (16p13.3) / LUC7L (16p13.3)NPRL3 LUC7L
ITFG3 LUC7LCREBBP LUC7L

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LUC7L   6723
Cards
Entrez_Gene (NCBI)LUC7L  55692  LUC7 like
AliasesLUC7B1; Luc7; SR+89; hLuc7B1
GeneCards (Weizmann)LUC7L
Ensembl hg19 (Hinxton)ENSG00000007392 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000007392 [Gene_View]  chr16:188969-229482 [Contig_View]  LUC7L [Vega]
ICGC DataPortalENSG00000007392
TCGA cBioPortalLUC7L
AceView (NCBI)LUC7L
Genatlas (Paris)LUC7L
WikiGenes55692
SOURCE (Princeton)LUC7L
Genetics Home Reference (NIH)LUC7L
Genomic and cartography
GoldenPath hg38 (UCSC)LUC7L  -     chr16:188969-229482 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LUC7L  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblLUC7L - 16p13.3 [CytoView hg19]  LUC7L - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBILUC7L [Mapview hg19]  LUC7L [Mapview hg38]
OMIM607782   
Gene and transcription
Genbank (Entrez)AJ404326 AJ404326 AK001093 AK097974 AK223084
RefSeq transcript (Entrez)NM_001320226 NM_001330420 NM_018032 NM_201412
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LUC7L
Cluster EST : UnigeneHs.16803 [ NCBI ]
CGAP (NCI)Hs.16803
Alternative Splicing GalleryENSG00000007392
Gene ExpressionLUC7L [ NCBI-GEO ]   LUC7L [ EBI - ARRAY_EXPRESS ]   LUC7L [ SEEK ]   LUC7L [ MEM ]
Gene Expression Viewer (FireBrowse)LUC7L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55692
GTEX Portal (Tissue expression)LUC7L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQ29   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQ29  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQ29
Splice isoforms : SwissVarQ9NQ29
PhosPhoSitePlusQ9NQ29
Domains : Interpro (EBI)Luc7-rel   
Domain families : Pfam (Sanger)LUC7 (PF03194)   
Domain families : Pfam (NCBI)pfam03194   
Conserved Domain (NCBI)LUC7L
DMDM Disease mutations55692
Blocks (Seattle)LUC7L
SuperfamilyQ9NQ29
Human Protein AtlasENSG00000007392
Peptide AtlasQ9NQ29
HPRD08476
IPIIPI00071318   IPI00410026   IPI00410027   IPI00658031   IPI00853373   IPI00879206   IPI00879047   IPI00893219   IPI00893614   IPI00927379   IPI00927709   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQ29
IntAct (EBI)Q9NQ29
FunCoupENSG00000007392
BioGRIDLUC7L
STRING (EMBL)LUC7L
ZODIACLUC7L
Ontologies - Pathways
QuickGOQ9NQ29
Ontology : AmiGOmRNA binding  protein binding  U1 snRNP  mRNA splice site selection  identical protein binding  negative regulation of striated muscle tissue development  RS domain binding  U2-type prespliceosome  
Ontology : EGO-EBImRNA binding  protein binding  U1 snRNP  mRNA splice site selection  identical protein binding  negative regulation of striated muscle tissue development  RS domain binding  U2-type prespliceosome  
NDEx NetworkLUC7L
Atlas of Cancer Signalling NetworkLUC7L
Wikipedia pathwaysLUC7L
Orthology - Evolution
OrthoDB55692
GeneTree (enSembl)ENSG00000007392
Phylogenetic Trees/Animal Genes : TreeFamLUC7L
HOVERGENQ9NQ29
HOGENOMQ9NQ29
Homologs : HomoloGeneLUC7L
Homology/Alignments : Family Browser (UCSC)LUC7L
Gene fusions - Rearrangements
Fusion: TCGANPRL3 LUC7L
Fusion: TCGAITFG3 LUC7L
Fusion: TCGACREBBP LUC7L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLUC7L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LUC7L
dbVarLUC7L
ClinVarLUC7L
1000_GenomesLUC7L 
Exome Variant ServerLUC7L
ExAC (Exome Aggregation Consortium)LUC7L (select the gene name)
Genetic variants : HAPMAP55692
Genomic Variants (DGV)LUC7L [DGVbeta]
DECIPHERLUC7L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLUC7L 
Mutations
ICGC Data PortalLUC7L 
TCGA Data PortalLUC7L 
Broad Tumor PortalLUC7L
OASIS PortalLUC7L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLUC7L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLUC7L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LUC7L
DgiDB (Drug Gene Interaction Database)LUC7L
DoCM (Curated mutations)LUC7L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LUC7L (select a term)
intoGenLUC7L
Cancer3DLUC7L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607782   
Orphanet
MedgenLUC7L
Genetic Testing Registry LUC7L
NextProtQ9NQ29 [Medical]
TSGene55692
GENETestsLUC7L
Target ValidationLUC7L
Huge Navigator LUC7L [HugePedia]
snp3D : Map Gene to Disease55692
BioCentury BCIQLUC7L
ClinGenLUC7L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55692
Chemical/Pharm GKB GenePA30485
Clinical trialLUC7L
Miscellaneous
canSAR (ICR)LUC7L (select the gene name)
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLUC7L
EVEXLUC7L
GoPubMedLUC7L
iHOPLUC7L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:26:41 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.