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LUC7L3 (LUC7 like 3 pre-mRNA splicing factor)

Identity

Alias_namesLUC7-like 3 (S. cerevisiae)
LUC7-like 3 pre-mRNA splicing factor
Alias_symbol (synonym)LUC7A
CROP
OA48-18
CREAP-1
FLJ11063
CRA
hLuc7A
Other alias
HGNC (Hugo) LUC7L3
LocusID (NCBI) 51747
Atlas_Id 68699
Location 17q21.33  [Link to chromosome band 17q21]
Location_base_pair Starts at 50719544 and ends at 50756213 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
APOE (19q13.32) / LUC7L3 (17q21.33)LUC7L3 (17q21.33) / ABCC3 (17q21.33)LUC7L3 (17q21.33) / C17orf64 (17q23.2)
LUC7L3 (17q21.33) / DEK (6p22.3)LUC7L3 (17q21.33) / IKZF3 (17q12)LUC7L3 (17q21.33) / LOC550643 ()
LUC7L3 (17q21.33) / MIA-RAB4B (19q13.2)LUC7L3 (17q21.33) / SCGB3A1 (5q35.3)LUC7L3 (17q21.33) / SP100 (2q37.1)
NASP (1p34.1) / LUC7L3 (17q21.33)RAB1A (2p14) / LUC7L3 (17q21.33)SPPL3 (12q24.31) / LUC7L3 (17q21.33)
TPT1 (13q14.13) / LUC7L3 (17q21.33)LUC7L3 C17orf64LUC7L3 IKZF3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LUC7L3   24309
Cards
Entrez_Gene (NCBI)LUC7L3  51747  LUC7 like 3 pre-mRNA splicing factor
AliasesCRA; CREAP-1; CROP; LUC7A; 
OA48-18; hLuc7A
GeneCards (Weizmann)LUC7L3
Ensembl hg19 (Hinxton)ENSG00000108848 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000108848 [Gene_View]  chr17:50719544-50756213 [Contig_View]  LUC7L3 [Vega]
ICGC DataPortalENSG00000108848
TCGA cBioPortalLUC7L3
AceView (NCBI)LUC7L3
Genatlas (Paris)LUC7L3
WikiGenes51747
SOURCE (Princeton)LUC7L3
Genetics Home Reference (NIH)LUC7L3
Genomic and cartography
GoldenPath hg38 (UCSC)LUC7L3  -     chr17:50719544-50756213 +  17q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LUC7L3  -     17q21.33   [Description]    (hg19-Feb_2009)
EnsemblLUC7L3 - 17q21.33 [CytoView hg19]  LUC7L3 - 17q21.33 [CytoView hg38]
Mapping of homologs : NCBILUC7L3 [Mapview hg19]  LUC7L3 [Mapview hg38]
OMIM609434   
Gene and transcription
Genbank (Entrez)AF069250 AF147357 AK001925 AK023672 AK027723
RefSeq transcript (Entrez)NM_001330330 NM_006107 NM_016424
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LUC7L3
Cluster EST : UnigeneHs.130293 [ NCBI ]
CGAP (NCI)Hs.130293
Alternative Splicing GalleryENSG00000108848
Gene ExpressionLUC7L3 [ NCBI-GEO ]   LUC7L3 [ EBI - ARRAY_EXPRESS ]   LUC7L3 [ SEEK ]   LUC7L3 [ MEM ]
Gene Expression Viewer (FireBrowse)LUC7L3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51747
GTEX Portal (Tissue expression)LUC7L3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95232   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95232  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95232
Splice isoforms : SwissVarO95232
PhosPhoSitePlusO95232
Domains : Interpro (EBI)Luc7-rel   
Domain families : Pfam (Sanger)LUC7 (PF03194)   
Domain families : Pfam (NCBI)pfam03194   
Conserved Domain (NCBI)LUC7L3
DMDM Disease mutations51747
Blocks (Seattle)LUC7L3
SuperfamilyO95232
Human Protein AtlasENSG00000108848
Peptide AtlasO95232
HPRD16759
IPIIPI00107745   IPI00448519   IPI00966213   IPI00966815   IPI00966025   IPI00967258   IPI00964389   IPI00964696   IPI00964357   IPI00981953   IPI00982600   IPI00978223   IPI00976212   
Protein Interaction databases
DIP (DOE-UCLA)O95232
IntAct (EBI)O95232
FunCoupENSG00000108848
BioGRIDLUC7L3
STRING (EMBL)LUC7L3
ZODIACLUC7L3
Ontologies - Pathways
QuickGOO95232
Ontology : AmiGODNA binding  RNA binding  mRNA binding  protein binding  nucleus  nucleoplasm  U1 snRNP  mRNA splice site selection  RNA splicing  nuclear speck  U2-type prespliceosome  
Ontology : EGO-EBIDNA binding  RNA binding  mRNA binding  protein binding  nucleus  nucleoplasm  U1 snRNP  mRNA splice site selection  RNA splicing  nuclear speck  U2-type prespliceosome  
NDEx NetworkLUC7L3
Atlas of Cancer Signalling NetworkLUC7L3
Wikipedia pathwaysLUC7L3
Orthology - Evolution
OrthoDB51747
GeneTree (enSembl)ENSG00000108848
Phylogenetic Trees/Animal Genes : TreeFamLUC7L3
HOVERGENO95232
HOGENOMO95232
Homologs : HomoloGeneLUC7L3
Homology/Alignments : Family Browser (UCSC)LUC7L3
Gene fusions - Rearrangements
Fusion: TCGALUC7L3 C17orf64
Fusion: TCGALUC7L3 IKZF3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLUC7L3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LUC7L3
dbVarLUC7L3
ClinVarLUC7L3
1000_GenomesLUC7L3 
Exome Variant ServerLUC7L3
ExAC (Exome Aggregation Consortium)LUC7L3 (select the gene name)
Genetic variants : HAPMAP51747
Genomic Variants (DGV)LUC7L3 [DGVbeta]
DECIPHERLUC7L3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLUC7L3 
Mutations
ICGC Data PortalLUC7L3 
TCGA Data PortalLUC7L3 
Broad Tumor PortalLUC7L3
OASIS PortalLUC7L3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLUC7L3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLUC7L3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LUC7L3
DgiDB (Drug Gene Interaction Database)LUC7L3
DoCM (Curated mutations)LUC7L3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LUC7L3 (select a term)
intoGenLUC7L3
Cancer3DLUC7L3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609434   
Orphanet
MedgenLUC7L3
Genetic Testing Registry LUC7L3
NextProtO95232 [Medical]
TSGene51747
GENETestsLUC7L3
Target ValidationLUC7L3
Huge Navigator LUC7L3 [HugePedia]
snp3D : Map Gene to Disease51747
BioCentury BCIQLUC7L3
ClinGenLUC7L3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51747
Chemical/Pharm GKB GenePA165432062
Clinical trialLUC7L3
Miscellaneous
canSAR (ICR)LUC7L3 (select the gene name)
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLUC7L3
EVEXLUC7L3
GoPubMedLUC7L3
iHOPLUC7L3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:25:10 CEST 2017

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