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LUC7L3 (LUC7 like 3 pre-mRNA splicing factor)

Identity

Alias (NCBI)CRA
CREAP-1
CROP
LUC7A
OA48-18
hLuc7A
HGNC (Hugo) LUC7L3
HGNC Alias symbLUC7A
CROP
OA48-18
CREAP-1
FLJ11063
CRA
hLuc7A
HGNC Alias namecisplatin resistance associated overexpressed protein
 CRE-associated protein
HGNC Previous nameLUC7-like 3 (S. cerevisiae)
 LUC7-like 3 pre-mRNA splicing factor
LocusID (NCBI) 51747
Atlas_Id 68699
Location 17q21.33  [Link to chromosome band 17q21]
Location_base_pair Starts at 50719603 and ends at 50756215 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
APOE (19q13.32) / LUC7L3 (17q21.33)LUC7L3 (17q21.33) / ABCC3 (17q21.33)LUC7L3 (17q21.33) / C17orf64 (17q23.2)
LUC7L3 (17q21.33) / DEK (6p22.3)LUC7L3 (17q21.33) / IKZF3 (17q12)LUC7L3 (17q21.33) / LOC550643 ()
LUC7L3 (17q21.33) / MIA-RAB4B (19q13.2)LUC7L3 (17q21.33) / SCGB3A1 (5q35.3)LUC7L3 (17q21.33) / SP100 (2q37.1)
NASP (1p34.1) / LUC7L3 (17q21.33)RAB1A (2p14) / LUC7L3 (17q21.33)SPPL3 (12q24.31) / LUC7L3 (17q21.33)
TPT1 (13q14.13) / LUC7L3 (17q21.33)LUC7L3 C17orf64LUC7L3 IKZF3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)LUC7L3   24309
Cards
Entrez_Gene (NCBI)LUC7L3    LUC7 like 3 pre-mRNA splicing factor
AliasesCRA; CREAP-1; CROP; LUC7A; 
OA48-18; hLuc7A
GeneCards (Weizmann)LUC7L3
Ensembl hg19 (Hinxton)ENSG00000108848 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000108848 [Gene_View]  ENSG00000108848 [Sequence]  chr17:50719603-50756215 [Contig_View]  LUC7L3 [Vega]
ICGC DataPortalENSG00000108848
TCGA cBioPortalLUC7L3
AceView (NCBI)LUC7L3
Genatlas (Paris)LUC7L3
SOURCE (Princeton)LUC7L3
Genetics Home Reference (NIH)LUC7L3
Genomic and cartography
GoldenPath hg38 (UCSC)LUC7L3  -     chr17:50719603-50756215 +  17q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LUC7L3  -     17q21.33   [Description]    (hg19-Feb_2009)
GoldenPathLUC7L3 - 17q21.33 [CytoView hg19]  LUC7L3 - 17q21.33 [CytoView hg38]
ImmunoBaseENSG00000108848
genome Data Viewer NCBILUC7L3 [Mapview hg19]  
OMIM609434   
Gene and transcription
Genbank (Entrez)AF069250 AF147357 AK001925 AK023672 AK027723
RefSeq transcript (Entrez)NM_001330330 NM_006107 NM_016424
Consensus coding sequences : CCDS (NCBI)LUC7L3
Alternative Splicing GalleryENSG00000108848
Gene ExpressionLUC7L3 [ NCBI-GEO ]   LUC7L3 [ EBI - ARRAY_EXPRESS ]   LUC7L3 [ SEEK ]   LUC7L3 [ MEM ]
Gene Expression Viewer (FireBrowse)LUC7L3 [ Firebrowse - Broad ]
GenevisibleExpression of LUC7L3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51747
GTEX Portal (Tissue expression)LUC7L3
Human Protein AtlasENSG00000108848-LUC7L3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95232   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95232  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95232
PhosPhoSitePlusO95232
Domains : Interpro (EBI)Luc7-rel   
Domain families : Pfam (Sanger)LUC7 (PF03194)   
Domain families : Pfam (NCBI)pfam03194   
Conserved Domain (NCBI)LUC7L3
SuperfamilyO95232
AlphaFold pdb e-kbO95232   
Human Protein Atlas [tissue]ENSG00000108848-LUC7L3 [tissue]
HPRD16759
Protein Interaction databases
DIP (DOE-UCLA)O95232
IntAct (EBI)O95232
BioGRIDLUC7L3
STRING (EMBL)LUC7L3
ZODIACLUC7L3
Ontologies - Pathways
QuickGOO95232
Ontology : AmiGODNA binding  RNA binding  mRNA binding  mRNA binding  protein binding  nucleus  nucleoplasm  U1 snRNP  mRNA splice site selection  RNA splicing  nuclear speck  U2-type prespliceosome  
Ontology : EGO-EBIDNA binding  RNA binding  mRNA binding  mRNA binding  protein binding  nucleus  nucleoplasm  U1 snRNP  mRNA splice site selection  RNA splicing  nuclear speck  U2-type prespliceosome  
NDEx NetworkLUC7L3
Atlas of Cancer Signalling NetworkLUC7L3
Wikipedia pathwaysLUC7L3
Orthology - Evolution
OrthoDB51747
GeneTree (enSembl)ENSG00000108848
Phylogenetic Trees/Animal Genes : TreeFamLUC7L3
Homologs : HomoloGeneLUC7L3
Homology/Alignments : Family Browser (UCSC)LUC7L3
Gene fusions - Rearrangements
Fusion PortalLUC7L3 C17orf64
Fusion PortalLUC7L3 IKZF3
Fusion : QuiverLUC7L3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLUC7L3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LUC7L3
dbVarLUC7L3
ClinVarLUC7L3
MonarchLUC7L3
1000_GenomesLUC7L3 
Exome Variant ServerLUC7L3
GNOMAD BrowserENSG00000108848
Varsome BrowserLUC7L3
Genomic Variants (DGV)LUC7L3 [DGVbeta]
DECIPHERLUC7L3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLUC7L3 
Mutations
ICGC Data PortalLUC7L3 
TCGA Data PortalLUC7L3 
Broad Tumor PortalLUC7L3
OASIS PortalLUC7L3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLUC7L3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DLUC7L3
Mutations and Diseases : HGMDLUC7L3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutasearch LUC7L3
DgiDB (Drug Gene Interaction Database)LUC7L3
DoCM (Curated mutations)LUC7L3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LUC7L3 (select a term)
Cancer3DLUC7L3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609434   
Orphanet
DisGeNETLUC7L3
MedgenLUC7L3
Genetic Testing Registry LUC7L3
NextProtO95232 [Medical]
GENETestsLUC7L3
Target ValidationLUC7L3
Huge Navigator LUC7L3 [HugePedia]
ClinGenLUC7L3
Clinical trials, drugs, therapy
MyCancerGenomeLUC7L3
Protein Interactions : CTDLUC7L3
Pharm GKB GenePA165432062
PharosO95232
Clinical trialLUC7L3
Miscellaneous
canSAR (ICR)LUC7L3
HarmonizomeLUC7L3
DataMed IndexLUC7L3
Probes
Litterature
PubMed88 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLUC7L3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Sep 15 23:13:59 CEST 2021

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