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LVCAT1 (liver cancer-associated transcript 1)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100506827
Atlas_Id 55284
Location 4p13  [Link to chromosome band 4p13]
Location_base_pair Starts at 44019079 and ends at 44024078 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LVCAT1  100506827  liver cancer-associated transcript 1
Aliases
GeneCards (Weizmann)LVCAT1
Ensembl hg19 (Hinxton)ENSG00000251350 [Gene_View]  chr4:44019079-44024078 [Contig_View]  LVCAT1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000251350 [Gene_View]  chr4:44019079-44024078 [Contig_View]  LVCAT1 [Vega]
ICGC DataPortalENSG00000251350
TCGA cBioPortalLVCAT1
AceView (NCBI)LVCAT1
Genatlas (Paris)LVCAT1
WikiGenes100506827
SOURCE (Princeton)LVCAT1
Genetics Home Reference (NIH)LVCAT1
Genomic and cartography
GoldenPath hg19 (UCSC)LVCAT1  -     chr4:44019079-44024078 +  4p13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LVCAT1  -     4p13   [Description]    (hg38-Dec_2013)
EnsemblLVCAT1 - 4p13 [CytoView hg19]  LVCAT1 - 4p13 [CytoView hg38]
Mapping of homologs : NCBILVCAT1 [Mapview hg19]  LVCAT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL038572 AL038573 BC042992 BU569738 HG496876
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006238 NW_004929317
Consensus coding sequences : CCDS (NCBI)LVCAT1
Cluster EST : UnigeneHs.156197 [ NCBI ]
CGAP (NCI)Hs.156197
Alternative Splicing GalleryENSG00000251350
Gene ExpressionLVCAT1 [ NCBI-GEO ]   LVCAT1 [ EBI - ARRAY_EXPRESS ]   LVCAT1 [ SEEK ]   LVCAT1 [ MEM ]
Gene Expression Viewer (FireBrowse)LVCAT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100506827
GTEX Portal (Tissue expression)LVCAT1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LVCAT1
DMDM Disease mutations100506827
Blocks (Seattle)LVCAT1
Human Protein AtlasENSG00000251350
Protein Interaction databases
FunCoupENSG00000251350
BioGRIDLVCAT1
STRING (EMBL)LVCAT1
ZODIACLVCAT1
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100506827
BioCentury BCIQLVCAT1
ClinGenLVCAT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506827
Clinical trialLVCAT1
Miscellaneous
canSAR (ICR)LVCAT1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLVCAT1
EVEXLVCAT1
GoPubMedLVCAT1
iHOPLVCAT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:08:04 CEST 2017

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