Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LVCAT5 (liver cancer-associated transcript 5)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 105375475
Atlas_Id 55296
Location 7q31.31  [Link to chromosome band 7q31]
Location_base_pair Starts at 119259484 and ends at 119547429 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LVCAT5  105375475  liver cancer-associated transcript 5
Aliases
GeneCards (Weizmann)LVCAT5
Ensembl hg19 (Hinxton) [Gene_View]  chr7:119259484-119547429 [Contig_View]  LVCAT5 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:119259484-119547429 [Contig_View]  LVCAT5 [Vega]
TCGA cBioPortalLVCAT5
AceView (NCBI)LVCAT5
Genatlas (Paris)LVCAT5
WikiGenes105375475
SOURCE (Princeton)LVCAT5
Genetics Home Reference (NIH)LVCAT5
Genomic and cartography
GoldenPath hg19 (UCSC)LVCAT5  -     chr7:119259484-119547429 -  7q31.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LVCAT5  -     7q31.31   [Description]    (hg38-Dec_2013)
EnsemblLVCAT5 - 7q31.31 [CytoView hg19]  LVCAT5 - 7q31.31 [CytoView hg38]
Mapping of homologs : NCBILVCAT5 [Mapview hg19]  LVCAT5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BE897957 BF239110 BF240256 BG494963 BU155524
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)LVCAT5
Cluster EST : UnigeneHs.745493 [ NCBI ]
CGAP (NCI)Hs.745493
Gene ExpressionLVCAT5 [ NCBI-GEO ]   LVCAT5 [ EBI - ARRAY_EXPRESS ]   LVCAT5 [ SEEK ]   LVCAT5 [ MEM ]
Gene Expression Viewer (FireBrowse)LVCAT5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105375475
GTEX Portal (Tissue expression)LVCAT5
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LVCAT5
DMDM Disease mutations105375475
Blocks (Seattle)LVCAT5
Protein Interaction databases
BioGRIDLVCAT5
STRING (EMBL)LVCAT5
ZODIACLVCAT5
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease105375475
BioCentury BCIQLVCAT5
ClinGenLVCAT5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105375475
Clinical trialLVCAT5
Miscellaneous
canSAR (ICR)LVCAT5 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLVCAT5
EVEXLVCAT5
GoPubMedLVCAT5
iHOPLVCAT5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:08:04 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.