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LVRN (laeverin)

Identity

Alias (NCBI)APQ
AQPEP
TAQPEP
HGNC (Hugo) LVRN
HGNC Alias symbAPQ
FLJ90650
AQPEP
TAQPEP
HGNC Alias nameaminopeptidase Q
LocusID (NCBI) 206338
Atlas_Id 77616
Location 5q23.1  [Link to chromosome band 5q23]
Location_base_pair Starts at 115962475 and ends at 116027605 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LVRN (5q23.1) / IDO2 (8p11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)LVRN   26904
Cards
Entrez_Gene (NCBI)LVRN    laeverin
AliasesAPQ; AQPEP; TAQPEP
GeneCards (Weizmann)LVRN
Ensembl hg19 (Hinxton)ENSG00000172901 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172901 [Gene_View]  ENSG00000172901 [Sequence]  chr5:115962475-116027605 [Contig_View]  LVRN [Vega]
ICGC DataPortalENSG00000172901
TCGA cBioPortalLVRN
AceView (NCBI)LVRN
Genatlas (Paris)LVRN
SOURCE (Princeton)LVRN
Genetics Home Reference (NIH)LVRN
Genomic and cartography
GoldenPath hg38 (UCSC)LVRN  -     chr5:115962475-116027605 +  5q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LVRN  -     5q23.1   [Description]    (hg19-Feb_2009)
GoldenPathLVRN - 5q23.1 [CytoView hg19]  LVRN - 5q23.1 [CytoView hg38]
ImmunoBaseENSG00000172901
Genome Data Viewer NCBILVRN [Mapview hg19]  
OMIM610046   
Gene and transcription
Genbank (Entrez)AK027809 AK055381 AK075131 AK291655 AY560010
RefSeq transcript (Entrez)NM_173800
Consensus coding sequences : CCDS (NCBI)LVRN
Gene ExpressionLVRN [ NCBI-GEO ]   LVRN [ EBI - ARRAY_EXPRESS ]   LVRN [ SEEK ]   LVRN [ MEM ]
Gene Expression Viewer (FireBrowse)LVRN [ Firebrowse - Broad ]
GenevisibleExpression of LVRN in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)206338
GTEX Portal (Tissue expression)LVRN
Human Protein AtlasENSG00000172901-LVRN [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6Q4G3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6Q4G3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6Q4G3
PhosPhoSitePlusQ6Q4G3
Domaine pattern : Prosite (Expaxy)ZINC_PROTEASE (PS00142)   
Domains : Interpro (EBI)Aminopeptidase_N-like_N    ERAP1-like_C_dom    M1_APN-typ    Peptidase_M1    Peptidase_M1_dom   
Domain families : Pfam (Sanger)ERAP1_C (PF11838)    Peptidase_M1 (PF01433)   
Domain families : Pfam (NCBI)pfam11838    pfam01433   
Conserved Domain (NCBI)LVRN
SuperfamilyQ6Q4G3
AlphaFold pdb e-kbQ6Q4G3   
Human Protein Atlas [tissue]ENSG00000172901-LVRN [tissue]
HPRD07118
Protein Interaction databases
DIP (DOE-UCLA)Q6Q4G3
IntAct (EBI)Q6Q4G3
BioGRIDLVRN
STRING (EMBL)LVRN
ZODIACLVRN
Ontologies - Pathways
QuickGOQ6Q4G3
Ontology : AmiGOcytoplasm  plasma membrane  proteolysis  signal transduction  regulation of blood pressure  zinc ion binding  integral component of membrane  peptide binding  peptide catabolic process  metalloaminopeptidase activity  
Ontology : EGO-EBIcytoplasm  plasma membrane  proteolysis  signal transduction  regulation of blood pressure  zinc ion binding  integral component of membrane  peptide binding  peptide catabolic process  metalloaminopeptidase activity  
NDEx NetworkLVRN
Atlas of Cancer Signalling NetworkLVRN
Wikipedia pathwaysLVRN
Orthology - Evolution
OrthoDB206338
GeneTree (enSembl)ENSG00000172901
Phylogenetic Trees/Animal Genes : TreeFamLVRN
Homologs : HomoloGeneLVRN
Homology/Alignments : Family Browser (UCSC)LVRN
Gene fusions - Rearrangements
Fusion : QuiverLVRN
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLVRN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LVRN
dbVarLVRN
ClinVarLVRN
MonarchLVRN
1000_GenomesLVRN 
Exome Variant ServerLVRN
GNOMAD BrowserENSG00000172901
Varsome BrowserLVRN
ACMGLVRN variants
VarityQ6Q4G3
Genomic Variants (DGV)LVRN [DGVbeta]
DECIPHERLVRN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLVRN 
Mutations
ICGC Data PortalLVRN 
TCGA Data PortalLVRN 
Broad Tumor PortalLVRN
OASIS PortalLVRN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLVRN  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DLVRN
Mutations and Diseases : HGMDLVRN
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaLVRN
DgiDB (Drug Gene Interaction Database)LVRN
DoCM (Curated mutations)LVRN
CIViC (Clinical Interpretations of Variants in Cancer)LVRN
Cancer3DLVRN
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610046   
Orphanet
DisGeNETLVRN
MedgenLVRN
Genetic Testing Registry LVRN
NextProtQ6Q4G3 [Medical]
GENETestsLVRN
Target ValidationLVRN
Huge Navigator LVRN [HugePedia]
ClinGenLVRN
Clinical trials, drugs, therapy
MyCancerGenomeLVRN
Protein Interactions : CTDLVRN
PharosQ6Q4G3
Clinical trialLVRN
Miscellaneous
canSAR (ICR)LVRN
HarmonizomeLVRN
DataMed IndexLVRN
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLVRN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:06:34 CEST 2021

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