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LVRN (laeverin)

Identity

Alias_symbol (synonym)APQ
FLJ90650
AQPEP
TAQPEP
Other alias
HGNC (Hugo) LVRN
LocusID (NCBI) 206338
Atlas_Id 77616
Location 5q23.1  [Link to chromosome band 5q23]
Location_base_pair Starts at 115962454 and ends at 116027602 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LVRN (5q23.1) / IDO2 (8p11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LVRN   26904
Cards
Entrez_Gene (NCBI)LVRN  206338  laeverin
AliasesAPQ; AQPEP; TAQPEP
GeneCards (Weizmann)LVRN
Ensembl hg19 (Hinxton)ENSG00000172901 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172901 [Gene_View]  chr5:115962454-116027602 [Contig_View]  LVRN [Vega]
ICGC DataPortalENSG00000172901
TCGA cBioPortalLVRN
AceView (NCBI)LVRN
Genatlas (Paris)LVRN
WikiGenes206338
SOURCE (Princeton)LVRN
Genetics Home Reference (NIH)LVRN
Genomic and cartography
GoldenPath hg38 (UCSC)LVRN  -     chr5:115962454-116027602 +  5q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LVRN  -     5q23.1   [Description]    (hg19-Feb_2009)
EnsemblLVRN - 5q23.1 [CytoView hg19]  LVRN - 5q23.1 [CytoView hg38]
Mapping of homologs : NCBILVRN [Mapview hg19]  LVRN [Mapview hg38]
OMIM610046   
Gene and transcription
Genbank (Entrez)AK027809 AK055381 AK075131 AK291655 AY560010
RefSeq transcript (Entrez)NM_173800
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LVRN
Cluster EST : UnigeneHs.556880 [ NCBI ]
CGAP (NCI)Hs.556880
Alternative Splicing GalleryENSG00000172901
Gene ExpressionLVRN [ NCBI-GEO ]   LVRN [ EBI - ARRAY_EXPRESS ]   LVRN [ SEEK ]   LVRN [ MEM ]
Gene Expression Viewer (FireBrowse)LVRN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)206338
GTEX Portal (Tissue expression)LVRN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6Q4G3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6Q4G3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6Q4G3
Splice isoforms : SwissVarQ6Q4G3
PhosPhoSitePlusQ6Q4G3
Domaine pattern : Prosite (Expaxy)ZINC_PROTEASE (PS00142)   
Domains : Interpro (EBI)ERAP1-like_C_dom    M1_APN-typ    Peptidase_M1    Peptidase_M1_N   
Domain families : Pfam (Sanger)ERAP1_C (PF11838)    Peptidase_M1 (PF01433)   
Domain families : Pfam (NCBI)pfam11838    pfam01433   
Conserved Domain (NCBI)LVRN
DMDM Disease mutations206338
Blocks (Seattle)LVRN
SuperfamilyQ6Q4G3
Human Protein AtlasENSG00000172901
Peptide AtlasQ6Q4G3
HPRD07118
IPIIPI00419976   IPI00884099   IPI00719130   IPI00783775   IPI00783977   IPI00965971   
Protein Interaction databases
DIP (DOE-UCLA)Q6Q4G3
IntAct (EBI)Q6Q4G3
FunCoupENSG00000172901
BioGRIDLVRN
STRING (EMBL)LVRN
ZODIACLVRN
Ontologies - Pathways
QuickGOQ6Q4G3
Ontology : AmiGOcytoplasm  proteolysis  signal transduction  cell-cell signaling  regulation of blood pressure  zinc ion binding  integral component of membrane  peptide binding  peptide catabolic process  metalloaminopeptidase activity  
Ontology : EGO-EBIcytoplasm  proteolysis  signal transduction  cell-cell signaling  regulation of blood pressure  zinc ion binding  integral component of membrane  peptide binding  peptide catabolic process  metalloaminopeptidase activity  
NDEx NetworkLVRN
Atlas of Cancer Signalling NetworkLVRN
Wikipedia pathwaysLVRN
Orthology - Evolution
OrthoDB206338
GeneTree (enSembl)ENSG00000172901
Phylogenetic Trees/Animal Genes : TreeFamLVRN
HOVERGENQ6Q4G3
HOGENOMQ6Q4G3
Homologs : HomoloGeneLVRN
Homology/Alignments : Family Browser (UCSC)LVRN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLVRN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LVRN
dbVarLVRN
ClinVarLVRN
1000_GenomesLVRN 
Exome Variant ServerLVRN
ExAC (Exome Aggregation Consortium)LVRN (select the gene name)
Genetic variants : HAPMAP206338
Genomic Variants (DGV)LVRN [DGVbeta]
DECIPHERLVRN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLVRN 
Mutations
ICGC Data PortalLVRN 
TCGA Data PortalLVRN 
Broad Tumor PortalLVRN
OASIS PortalLVRN [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLVRN
BioMutasearch LVRN
DgiDB (Drug Gene Interaction Database)LVRN
DoCM (Curated mutations)LVRN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LVRN (select a term)
intoGenLVRN
Cancer3DLVRN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610046   
Orphanet
MedgenLVRN
Genetic Testing Registry LVRN
NextProtQ6Q4G3 [Medical]
TSGene206338
GENETestsLVRN
Target ValidationLVRN
Huge Navigator LVRN [HugePedia]
snp3D : Map Gene to Disease206338
BioCentury BCIQLVRN
ClinGenLVRN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD206338
Clinical trialLVRN
Miscellaneous
canSAR (ICR)LVRN (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLVRN
EVEXLVRN
GoPubMedLVRN
iHOPLVRN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:26:43 CEST 2017

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