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LY6D (lymphocyte antigen 6 family member D)

Identity

Alias_symbol (synonym)E48
Other aliasLy-6D
HGNC (Hugo) LY6D
LocusID (NCBI) 8581
Atlas_Id 53679
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 142784882 and ends at 142786592 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LY6D (8q24.3) / LY6D (8q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LY6D   13348
Cards
Entrez_Gene (NCBI)LY6D  8581  lymphocyte antigen 6 family member D
AliasesE48; Ly-6D
GeneCards (Weizmann)LY6D
Ensembl hg19 (Hinxton)ENSG00000167656 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167656 [Gene_View]  chr8:142784882-142786592 [Contig_View]  LY6D [Vega]
ICGC DataPortalENSG00000167656
TCGA cBioPortalLY6D
AceView (NCBI)LY6D
Genatlas (Paris)LY6D
WikiGenes8581
SOURCE (Princeton)LY6D
Genetics Home Reference (NIH)LY6D
Genomic and cartography
GoldenPath hg38 (UCSC)LY6D  -     chr8:142784882-142786592 -  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LY6D  -     8q24.3   [Description]    (hg19-Feb_2009)
EnsemblLY6D - 8q24.3 [CytoView hg19]  LY6D - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBILY6D [Mapview hg19]  LY6D [Mapview hg38]
OMIM606204   
Gene and transcription
Genbank (Entrez)AK312164 BC022806 BC031330 BC034542 BM019592
RefSeq transcript (Entrez)NM_003695
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LY6D
Cluster EST : UnigeneHs.415762 [ NCBI ]
CGAP (NCI)Hs.415762
Alternative Splicing GalleryENSG00000167656
Gene ExpressionLY6D [ NCBI-GEO ]   LY6D [ EBI - ARRAY_EXPRESS ]   LY6D [ SEEK ]   LY6D [ MEM ]
Gene Expression Viewer (FireBrowse)LY6D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8581
GTEX Portal (Tissue expression)LY6D
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14210   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14210  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14210
Splice isoforms : SwissVarQ14210
PhosPhoSitePlusQ14210
Domaine pattern : Prosite (Expaxy)LY6_UPAR (PS00983)   
Domains : Interpro (EBI)CD59_antigen_CS    LY6_UPA_recep-like   
Domain families : Pfam (Sanger)UPAR_LY6 (PF00021)   
Domain families : Pfam (NCBI)pfam00021   
Domain families : Smart (EMBL)LU (SM00134)  
Conserved Domain (NCBI)LY6D
DMDM Disease mutations8581
Blocks (Seattle)LY6D
SuperfamilyQ14210
Human Protein AtlasENSG00000167656
Peptide AtlasQ14210
HPRD09370
IPIIPI00029510   IPI00816169   
Protein Interaction databases
DIP (DOE-UCLA)Q14210
IntAct (EBI)Q14210
FunCoupENSG00000167656
BioGRIDLY6D
STRING (EMBL)LY6D
ZODIACLY6D
Ontologies - Pathways
QuickGOQ14210
Ontology : AmiGOextracellular region  plasma membrane  C-terminal protein lipidation  cell adhesion  cell surface  membrane  lymphocyte differentiation  anchored component of membrane  response to stilbenoid  
Ontology : EGO-EBIextracellular region  plasma membrane  C-terminal protein lipidation  cell adhesion  cell surface  membrane  lymphocyte differentiation  anchored component of membrane  response to stilbenoid  
NDEx NetworkLY6D
Atlas of Cancer Signalling NetworkLY6D
Wikipedia pathwaysLY6D
Orthology - Evolution
OrthoDB8581
GeneTree (enSembl)ENSG00000167656
Phylogenetic Trees/Animal Genes : TreeFamLY6D
HOVERGENQ14210
HOGENOMQ14210
Homologs : HomoloGeneLY6D
Homology/Alignments : Family Browser (UCSC)LY6D
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLY6D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LY6D
dbVarLY6D
ClinVarLY6D
1000_GenomesLY6D 
Exome Variant ServerLY6D
ExAC (Exome Aggregation Consortium)LY6D (select the gene name)
Genetic variants : HAPMAP8581
Genomic Variants (DGV)LY6D [DGVbeta]
DECIPHERLY6D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLY6D 
Mutations
ICGC Data PortalLY6D 
TCGA Data PortalLY6D 
Broad Tumor PortalLY6D
OASIS PortalLY6D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLY6D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLY6D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LY6D
DgiDB (Drug Gene Interaction Database)LY6D
DoCM (Curated mutations)LY6D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LY6D (select a term)
intoGenLY6D
Cancer3DLY6D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606204   
Orphanet
MedgenLY6D
Genetic Testing Registry LY6D
NextProtQ14210 [Medical]
TSGene8581
GENETestsLY6D
Huge Navigator LY6D [HugePedia]
snp3D : Map Gene to Disease8581
BioCentury BCIQLY6D
ClinGenLY6D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8581
Chemical/Pharm GKB GenePA134928593
Clinical trialLY6D
Miscellaneous
canSAR (ICR)LY6D (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLY6D
EVEXLY6D
GoPubMedLY6D
iHOPLY6D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:23:41 CEST 2017

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