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LY6G5B (lymphocyte antigen 6 family member G5B)

Identity

Alias_namesC6orf19
chromosome 6 open reading frame 19
Alias_symbol (synonym)G5b
Other alias
HGNC (Hugo) LY6G5B
LocusID (NCBI) 58496
Atlas_Id 68706
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31670951 and ends at 31672450 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LY6G5B   13931
Cards
Entrez_Gene (NCBI)LY6G5B  58496  lymphocyte antigen 6 family member G5B
AliasesC6orf19; G5b
GeneCards (Weizmann)LY6G5B
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:31670951-31672450 [Contig_View]  LY6G5B [Vega]
TCGA cBioPortalLY6G5B
AceView (NCBI)LY6G5B
Genatlas (Paris)LY6G5B
WikiGenes58496
SOURCE (Princeton)LY6G5B
Genetics Home Reference (NIH)LY6G5B
Genomic and cartography
GoldenPath hg38 (UCSC)LY6G5B  -     chr6:31670951-31672450 +  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LY6G5B  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblLY6G5B - 6p21.33 [CytoView hg19]  LY6G5B - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBILY6G5B [Mapview hg19]  LY6G5B [Mapview hg38]
OMIM610433   
Gene and transcription
Genbank (Entrez)AJ245417 AJ315545 AK289364 BC140260 BC146529
RefSeq transcript (Entrez)NM_021221
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)LY6G5B
Cluster EST : UnigeneHs.708719 [ NCBI ]
CGAP (NCI)Hs.708719
Gene ExpressionLY6G5B [ NCBI-GEO ]   LY6G5B [ EBI - ARRAY_EXPRESS ]   LY6G5B [ SEEK ]   LY6G5B [ MEM ]
Gene Expression Viewer (FireBrowse)LY6G5B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58496
GTEX Portal (Tissue expression)LY6G5B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NDX9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NDX9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NDX9
Splice isoforms : SwissVarQ8NDX9
PhosPhoSitePlusQ8NDX9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LY6G5B
DMDM Disease mutations58496
Blocks (Seattle)LY6G5B
SuperfamilyQ8NDX9
Peptide AtlasQ8NDX9
HPRD10063
IPIIPI00640531   IPI00917417   IPI00302153   IPI00884889   IPI00843824   IPI00647922   
Protein Interaction databases
DIP (DOE-UCLA)Q8NDX9
IntAct (EBI)Q8NDX9
BioGRIDLY6G5B
STRING (EMBL)LY6G5B
ZODIACLY6G5B
Ontologies - Pathways
QuickGOQ8NDX9
Ontology : AmiGOmolecular_function  cellular_component  extracellular region  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  extracellular region  biological_process  
NDEx NetworkLY6G5B
Atlas of Cancer Signalling NetworkLY6G5B
Wikipedia pathwaysLY6G5B
Orthology - Evolution
OrthoDB58496
Phylogenetic Trees/Animal Genes : TreeFamLY6G5B
HOVERGENQ8NDX9
HOGENOMQ8NDX9
Homologs : HomoloGeneLY6G5B
Homology/Alignments : Family Browser (UCSC)LY6G5B
Gene fusions - Rearrangements
Fusion : QuiverLY6G5B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLY6G5B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LY6G5B
dbVarLY6G5B
ClinVarLY6G5B
1000_GenomesLY6G5B 
Exome Variant ServerLY6G5B
Varsome BrowserLY6G5B
Genetic variants : HAPMAP58496
Genomic Variants (DGV)LY6G5B [DGVbeta]
DECIPHERLY6G5B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLY6G5B 
Mutations
ICGC Data PortalLY6G5B 
TCGA Data PortalLY6G5B 
Broad Tumor PortalLY6G5B
OASIS PortalLY6G5B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLY6G5B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLY6G5B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LY6G5B
DgiDB (Drug Gene Interaction Database)LY6G5B
DoCM (Curated mutations)LY6G5B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LY6G5B (select a term)
intoGenLY6G5B
Cancer3DLY6G5B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610433   
Orphanet
DisGeNETLY6G5B
MedgenLY6G5B
Genetic Testing Registry LY6G5B
NextProtQ8NDX9 [Medical]
TSGene58496
GENETestsLY6G5B
Target ValidationLY6G5B
Huge Navigator LY6G5B [HugePedia]
snp3D : Map Gene to Disease58496
BioCentury BCIQLY6G5B
ClinGenLY6G5B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58496
Chemical/Pharm GKB GenePA37826
Clinical trialLY6G5B
Miscellaneous
canSAR (ICR)LY6G5B (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLY6G5B
EVEXLY6G5B
GoPubMedLY6G5B
iHOPLY6G5B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:12:01 CEST 2018

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