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LY6G5C (lymphocyte antigen 6 family member G5C)

Identity

Alias_namesC6orf20
chromosome 6 open reading frame 20
Alias_symbol (synonym)G5c
NG33
Other aliasG5C
LY6G5CA
LY6G5CB
HGNC (Hugo) LY6G5C
LocusID (NCBI) 80741
Atlas_Id 54436
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31676684 and ends at 31680373 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BAG6 (6p21.33) / LY6G5C (6p21.33)LY6G5C (6p21.33) / ABHD16A (6p21.33)BAG6 6p21.33 / LY6G5C 6p21.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LY6G5C   13932
Cards
Entrez_Gene (NCBI)LY6G5C  80741  lymphocyte antigen 6 family member G5C
AliasesC6orf20; G5C; LY6G5CA; LY6G5CB; 
NG33
GeneCards (Weizmann)LY6G5C
Ensembl hg19 (Hinxton)ENSG00000204428 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204428 [Gene_View]  chr6:31676684-31680373 [Contig_View]  LY6G5C [Vega]
ICGC DataPortalENSG00000204428
TCGA cBioPortalLY6G5C
AceView (NCBI)LY6G5C
Genatlas (Paris)LY6G5C
WikiGenes80741
SOURCE (Princeton)LY6G5C
Genetics Home Reference (NIH)LY6G5C
Genomic and cartography
GoldenPath hg38 (UCSC)LY6G5C  -     chr6:31676684-31680373 -  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LY6G5C  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblLY6G5C - 6p21.33 [CytoView hg19]  LY6G5C - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBILY6G5C [Mapview hg19]  LY6G5C [Mapview hg38]
OMIM610434   
Gene and transcription
Genbank (Entrez)AA179679 AA731226 AJ315540 AJ315541 AJ315542
RefSeq transcript (Entrez)NM_001002848 NM_001002849 NM_025262
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)LY6G5C
Cluster EST : UnigeneHs.25738 [ NCBI ]
CGAP (NCI)Hs.25738
Alternative Splicing GalleryENSG00000204428
Gene ExpressionLY6G5C [ NCBI-GEO ]   LY6G5C [ EBI - ARRAY_EXPRESS ]   LY6G5C [ SEEK ]   LY6G5C [ MEM ]
Gene Expression Viewer (FireBrowse)LY6G5C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80741
GTEX Portal (Tissue expression)LY6G5C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SRR4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SRR4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SRR4
Splice isoforms : SwissVarQ5SRR4
PhosPhoSitePlusQ5SRR4
Domains : Interpro (EBI)LY6G5C   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LY6G5C
DMDM Disease mutations80741
Blocks (Seattle)LY6G5C
SuperfamilyQ5SRR4
Human Protein AtlasENSG00000204428
Peptide AtlasQ5SRR4
HPRD14328
IPIIPI00640943   IPI00844180   IPI00936697   IPI00641500   IPI00945752   
Protein Interaction databases
DIP (DOE-UCLA)Q5SRR4
IntAct (EBI)Q5SRR4
FunCoupENSG00000204428
BioGRIDLY6G5C
STRING (EMBL)LY6G5C
ZODIACLY6G5C
Ontologies - Pathways
QuickGOQ5SRR4
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkLY6G5C
Atlas of Cancer Signalling NetworkLY6G5C
Wikipedia pathwaysLY6G5C
Orthology - Evolution
OrthoDB80741
GeneTree (enSembl)ENSG00000204428
Phylogenetic Trees/Animal Genes : TreeFamLY6G5C
HOVERGENQ5SRR4
HOGENOMQ5SRR4
Homologs : HomoloGeneLY6G5C
Homology/Alignments : Family Browser (UCSC)LY6G5C
Gene fusions - Rearrangements
Fusion : MitelmanBAG6/LY6G5C [6p21.33/6p21.33]  [t(6;6)(p21;p21)]  
Fusion : MitelmanLY6G5C/ABHD16A [6p21.33/6p21.33]  [t(6;6)(p21;p21)]  
Fusion: TCGABAG6 6p21.33 LY6G5C 6p21.33 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLY6G5C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LY6G5C
dbVarLY6G5C
ClinVarLY6G5C
1000_GenomesLY6G5C 
Exome Variant ServerLY6G5C
ExAC (Exome Aggregation Consortium)LY6G5C (select the gene name)
Genetic variants : HAPMAP80741
Genomic Variants (DGV)LY6G5C [DGVbeta]
DECIPHERLY6G5C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLY6G5C 
Mutations
ICGC Data PortalLY6G5C 
TCGA Data PortalLY6G5C 
Broad Tumor PortalLY6G5C
OASIS PortalLY6G5C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLY6G5C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLY6G5C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LY6G5C
DgiDB (Drug Gene Interaction Database)LY6G5C
DoCM (Curated mutations)LY6G5C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LY6G5C (select a term)
intoGenLY6G5C
Cancer3DLY6G5C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610434   
Orphanet
MedgenLY6G5C
Genetic Testing Registry LY6G5C
NextProtQ5SRR4 [Medical]
TSGene80741
GENETestsLY6G5C
Target ValidationLY6G5C
Huge Navigator LY6G5C [HugePedia]
snp3D : Map Gene to Disease80741
BioCentury BCIQLY6G5C
ClinGenLY6G5C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80741
Chemical/Pharm GKB GenePA37827
Clinical trialLY6G5C
Miscellaneous
canSAR (ICR)LY6G5C (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLY6G5C
EVEXLY6G5C
GoPubMedLY6G5C
iHOPLY6G5C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:41:46 CEST 2017

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