LY6G5C (lymphocyte antigen 6 family member G5C)

2014-08-01  

Identity

HGNC
LY6G5C
LOCATION
6p21.33
LOCUSID
80741
ALIAS
C6orf20,G5C,LY6G5CA,LY6G5CB,NG33
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 80741
MIM: 610434
HGNC: 13932
Ensembl: ENSG00000204428

Variants:

dbSNP: 80741
ClinVar: 80741
TCGA: ENSG00000204428
COSMIC: LY6G5C

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000204428ENST00000375863H7BYB1
ENSG00000204428ENST00000383237Q5SRR4
ENSG00000204428ENST00000383237A0A1U9X7Y6
ENSG00000204428ENST00000474678F8WBQ4

Expression (GTEx)

0
5
10
15
20
25
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
198514452009High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions.51
188358792008Fine mapping of the MHC Class III region demonstrates association of AIF1 and rheumatoid arthritis.12

Citation

Dessen P

LY6G5C (lymphocyte antigen 6 family member G5C)

Atlas Genet Cytogenet Oncol Haematol. 2014-08-01

Online version: http://atlasgeneticsoncology.org/gene/54436/ly6g5c