Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LY6G6C (lymphocyte antigen 6 family member G6C)

Identity

Alias_namesC6orf24
chromosome 6 open reading frame 24
Alias_symbol (synonym)G6c
NG24
Other alias
HGNC (Hugo) LY6G6C
LocusID (NCBI) 80740
Atlas_Id 68707
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31718648 and ends at 31721734 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LY6G6C   13936
Cards
Entrez_Gene (NCBI)LY6G6C  80740  lymphocyte antigen 6 family member G6C
AliasesC6orf24; G6c; NG24
GeneCards (Weizmann)LY6G6C
Ensembl hg19 (Hinxton)ENSG00000204421 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204421 [Gene_View]  chr6:31718648-31721734 [Contig_View]  LY6G6C [Vega]
ICGC DataPortalENSG00000204421
TCGA cBioPortalLY6G6C
AceView (NCBI)LY6G6C
Genatlas (Paris)LY6G6C
WikiGenes80740
SOURCE (Princeton)LY6G6C
Genetics Home Reference (NIH)LY6G6C
Genomic and cartography
GoldenPath hg38 (UCSC)LY6G6C  -     chr6:31718648-31721734 -  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LY6G6C  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblLY6G6C - 6p21.33 [CytoView hg19]  LY6G6C - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBILY6G6C [Mapview hg19]  LY6G6C [Mapview hg38]
OMIM610435   
Gene and transcription
Genbank (Entrez)AJ315533 AJ315534 AY359119 BC036302
RefSeq transcript (Entrez)NM_025261
RefSeq genomic (Entrez)NC_000006 NC_018917 NG_029044 NT_113891 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)LY6G6C
Cluster EST : UnigeneHs.732272 [ NCBI ]
CGAP (NCI)Hs.732272
Alternative Splicing GalleryENSG00000204421
Gene ExpressionLY6G6C [ NCBI-GEO ]   LY6G6C [ EBI - ARRAY_EXPRESS ]   LY6G6C [ SEEK ]   LY6G6C [ MEM ]
Gene Expression Viewer (FireBrowse)LY6G6C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80740
GTEX Portal (Tissue expression)LY6G6C
Human Protein AtlasENSG00000204421-LY6G6C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95867   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95867  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95867
Splice isoforms : SwissVarO95867
PhosPhoSitePlusO95867
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LY6G6C
DMDM Disease mutations80740
Blocks (Seattle)LY6G6C
SuperfamilyO95867
Human Protein Atlas [tissue]ENSG00000204421-LY6G6C [tissue]
Peptide AtlasO95867
HPRD14329
IPIIPI00000761   
Protein Interaction databases
DIP (DOE-UCLA)O95867
IntAct (EBI)O95867
FunCoupENSG00000204421
BioGRIDLY6G6C
STRING (EMBL)LY6G6C
ZODIACLY6G6C
Ontologies - Pathways
QuickGOO95867
Ontology : AmiGOextracellular region  plasma membrane  C-terminal protein lipidation  anchored component of membrane  
Ontology : EGO-EBIextracellular region  plasma membrane  C-terminal protein lipidation  anchored component of membrane  
NDEx NetworkLY6G6C
Atlas of Cancer Signalling NetworkLY6G6C
Wikipedia pathwaysLY6G6C
Orthology - Evolution
OrthoDB80740
GeneTree (enSembl)ENSG00000204421
Phylogenetic Trees/Animal Genes : TreeFamLY6G6C
HOVERGENO95867
HOGENOMO95867
Homologs : HomoloGeneLY6G6C
Homology/Alignments : Family Browser (UCSC)LY6G6C
Gene fusions - Rearrangements
Fusion: Tumor Portal LY6G6C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLY6G6C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LY6G6C
dbVarLY6G6C
ClinVarLY6G6C
1000_GenomesLY6G6C 
Exome Variant ServerLY6G6C
ExAC (Exome Aggregation Consortium)ENSG00000204421
GNOMAD BrowserENSG00000204421
Genetic variants : HAPMAP80740
Genomic Variants (DGV)LY6G6C [DGVbeta]
DECIPHERLY6G6C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLY6G6C 
Mutations
ICGC Data PortalLY6G6C 
TCGA Data PortalLY6G6C 
Broad Tumor PortalLY6G6C
OASIS PortalLY6G6C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLY6G6C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLY6G6C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LY6G6C
DgiDB (Drug Gene Interaction Database)LY6G6C
DoCM (Curated mutations)LY6G6C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LY6G6C (select a term)
intoGenLY6G6C
Cancer3DLY6G6C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610435   
Orphanet
MedgenLY6G6C
Genetic Testing Registry LY6G6C
NextProtO95867 [Medical]
TSGene80740
GENETestsLY6G6C
Target ValidationLY6G6C
Huge Navigator LY6G6C [HugePedia]
snp3D : Map Gene to Disease80740
BioCentury BCIQLY6G6C
ClinGenLY6G6C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80740
Chemical/Pharm GKB GenePA37830
Clinical trialLY6G6C
Miscellaneous
canSAR (ICR)LY6G6C (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLY6G6C
EVEXLY6G6C
GoPubMedLY6G6C
iHOPLY6G6C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:11:56 CET 2017

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