Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LY6G6D (lymphocyte antigen 6 family member G6D)

Identity

Alias_namesC6orf23
chromosome 6 open reading frame 23
Alias_symbol (synonym)MEGT1
Ly6-D
G6D
LY6-D
NG25
Other alias
HGNC (Hugo) LY6G6D
LocusID (NCBI) 58530
Atlas_Id 68708
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31715356 and ends at 31717804 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LY6G6D   13935
Cards
Entrez_Gene (NCBI)LY6G6D  58530  lymphocyte antigen 6 family member G6D
AliasesC6orf23; G6D; LY6-D; MEGT1; 
NG25
GeneCards (Weizmann)LY6G6D
Ensembl hg19 (Hinxton)ENSG00000244355 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000244355 [Gene_View]  chr6:31715356-31717804 [Contig_View]  LY6G6D [Vega]
ICGC DataPortalENSG00000244355
TCGA cBioPortalLY6G6D
AceView (NCBI)LY6G6D
Genatlas (Paris)LY6G6D
WikiGenes58530
SOURCE (Princeton)LY6G6D
Genetics Home Reference (NIH)LY6G6D
Genomic and cartography
GoldenPath hg38 (UCSC)LY6G6D  -     chr6:31715356-31717804 +  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LY6G6D  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblLY6G6D - 6p21.33 [CytoView hg19]  LY6G6D - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBILY6G6D [Mapview hg19]  LY6G6D [Mapview hg38]
OMIM606038   
Gene and transcription
Genbank (Entrez)AJ315535 AJ315536 AJ315537 BC125138 KU253638
RefSeq transcript (Entrez)NM_021246
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)LY6G6D
Cluster EST : UnigeneHs.591792 [ NCBI ]
CGAP (NCI)Hs.591792
Alternative Splicing GalleryENSG00000244355
Gene ExpressionLY6G6D [ NCBI-GEO ]   LY6G6D [ EBI - ARRAY_EXPRESS ]   LY6G6D [ SEEK ]   LY6G6D [ MEM ]
Gene Expression Viewer (FireBrowse)LY6G6D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58530
GTEX Portal (Tissue expression)LY6G6D
Human Protein AtlasENSG00000244355-LY6G6D [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95868   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95868  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95868
Splice isoforms : SwissVarO95868
PhosPhoSitePlusO95868
Domains : Interpro (EBI)LY6G6d/LY6G6f   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LY6G6D
DMDM Disease mutations58530
Blocks (Seattle)LY6G6D
SuperfamilyO95868
Human Protein Atlas [tissue]ENSG00000244355-LY6G6D [tissue]
Peptide AtlasO95868
HPRD16192
IPIIPI00383874   IPI00893937   IPI00009742   IPI00168619   IPI00646358   IPI00893695   IPI00893528   
Protein Interaction databases
DIP (DOE-UCLA)O95868
IntAct (EBI)O95868
FunCoupENSG00000244355
BioGRIDLY6G6D
STRING (EMBL)LY6G6D
ZODIACLY6G6D
Ontologies - Pathways
QuickGOO95868
Ontology : AmiGOextracellular region  plasma membrane  C-terminal protein lipidation  filopodium  acetylcholine receptor inhibitor activity  anchored component of membrane  acetylcholine receptor signaling pathway  negative regulation of receptor activity  
Ontology : EGO-EBIextracellular region  plasma membrane  C-terminal protein lipidation  filopodium  acetylcholine receptor inhibitor activity  anchored component of membrane  acetylcholine receptor signaling pathway  negative regulation of receptor activity  
NDEx NetworkLY6G6D
Atlas of Cancer Signalling NetworkLY6G6D
Wikipedia pathwaysLY6G6D
Orthology - Evolution
OrthoDB58530
GeneTree (enSembl)ENSG00000244355
Phylogenetic Trees/Animal Genes : TreeFamLY6G6D
HOVERGENO95868
HOGENOMO95868
Homologs : HomoloGeneLY6G6D
Homology/Alignments : Family Browser (UCSC)LY6G6D
Gene fusions - Rearrangements
Tumor Fusion PortalLY6G6D
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLY6G6D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LY6G6D
dbVarLY6G6D
ClinVarLY6G6D
1000_GenomesLY6G6D 
Exome Variant ServerLY6G6D
ExAC (Exome Aggregation Consortium)ENSG00000244355
GNOMAD BrowserENSG00000244355
Genetic variants : HAPMAP58530
Genomic Variants (DGV)LY6G6D [DGVbeta]
DECIPHERLY6G6D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLY6G6D 
Mutations
ICGC Data PortalLY6G6D 
TCGA Data PortalLY6G6D 
Broad Tumor PortalLY6G6D
OASIS PortalLY6G6D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLY6G6D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLY6G6D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LY6G6D
DgiDB (Drug Gene Interaction Database)LY6G6D
DoCM (Curated mutations)LY6G6D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LY6G6D (select a term)
intoGenLY6G6D
Cancer3DLY6G6D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606038   
Orphanet
DisGeNETLY6G6D
MedgenLY6G6D
Genetic Testing Registry LY6G6D
NextProtO95868 [Medical]
TSGene58530
GENETestsLY6G6D
Target ValidationLY6G6D
Huge Navigator LY6G6D [HugePedia]
snp3D : Map Gene to Disease58530
BioCentury BCIQLY6G6D
ClinGenLY6G6D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58530
Chemical/Pharm GKB GenePA37829
Clinical trialLY6G6D
Miscellaneous
canSAR (ICR)LY6G6D (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLY6G6D
EVEXLY6G6D
GoPubMedLY6G6D
iHOPLY6G6D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:14:30 CET 2017

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