Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LY6G6F (lymphocyte antigen 6 complex, locus G6F)

Identity

Alias_namesLY6G6D
C6orf21
chromosome 6 open reading frame 21
Alias_symbol (synonym)G6f
NG32
Other alias
HGNC (Hugo) LY6G6F
LocusID (NCBI) 259215
Atlas_Id 68709
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31674684 and ends at 31678372 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LY6G6F   13933
Cards
Entrez_Gene (NCBI)LY6G6F  259215  lymphocyte antigen 6 complex, locus G6F
AliasesC6orf21; G6f; LY6G6D; NG32
GeneCards (Weizmann)LY6G6F
Ensembl hg19 (Hinxton)ENSG00000204424 [Gene_View]  chr6:31674684-31678372 [Contig_View]  LY6G6F [Vega]
Ensembl hg38 (Hinxton)ENSG00000204424 [Gene_View]  chr6:31674684-31678372 [Contig_View]  LY6G6F [Vega]
ICGC DataPortalENSG00000204424
TCGA cBioPortalLY6G6F
AceView (NCBI)LY6G6F
Genatlas (Paris)LY6G6F
WikiGenes259215
SOURCE (Princeton)LY6G6F
Genetics Home Reference (NIH)LY6G6F
Genomic and cartography
GoldenPath hg19 (UCSC)LY6G6F  -     chr6:31674684-31678372 +  6p21.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LY6G6F  -     6p21.33   [Description]    (hg38-Dec_2013)
EnsemblLY6G6F - 6p21.33 [CytoView hg19]  LY6G6F - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBILY6G6F [Mapview hg19]  LY6G6F [Mapview hg38]
OMIM611404   
Gene and transcription
Genbank (Entrez)AJ496460 BC137212 BC137213
RefSeq transcript (Entrez)NM_001003693
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_007592 NT_113891 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249 NW_004929326
Consensus coding sequences : CCDS (NCBI)LY6G6F
Cluster EST : UnigeneHs.591794 [ NCBI ]
CGAP (NCI)Hs.591794
Alternative Splicing GalleryENSG00000204424
Gene ExpressionLY6G6F [ NCBI-GEO ]   LY6G6F [ EBI - ARRAY_EXPRESS ]   LY6G6F [ SEEK ]   LY6G6F [ MEM ]
Gene Expression Viewer (FireBrowse)LY6G6F [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)259215
GTEX Portal (Tissue expression)LY6G6F
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SQ64   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SQ64  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SQ64
Splice isoforms : SwissVarQ5SQ64
PhosPhoSitePlusQ5SQ64
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set    LY6G6d/LY6G6f   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)LY6G6F
DMDM Disease mutations259215
Blocks (Seattle)LY6G6F
SuperfamilyQ5SQ64
Human Protein AtlasENSG00000204424
Peptide AtlasQ5SQ64
HPRD12878
IPIIPI00644768   
Protein Interaction databases
DIP (DOE-UCLA)Q5SQ64
IntAct (EBI)Q5SQ64
FunCoupENSG00000204424
BioGRIDLY6G6F
STRING (EMBL)LY6G6F
ZODIACLY6G6F
Ontologies - Pathways
QuickGOQ5SQ64
Ontology : AmiGOplasma membrane  integral component of membrane  
Ontology : EGO-EBIplasma membrane  integral component of membrane  
NDEx NetworkLY6G6F
Atlas of Cancer Signalling NetworkLY6G6F
Wikipedia pathwaysLY6G6F
Orthology - Evolution
OrthoDB259215
GeneTree (enSembl)ENSG00000204424
Phylogenetic Trees/Animal Genes : TreeFamLY6G6F
HOVERGENQ5SQ64
HOGENOMQ5SQ64
Homologs : HomoloGeneLY6G6F
Homology/Alignments : Family Browser (UCSC)LY6G6F
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLY6G6F [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LY6G6F
dbVarLY6G6F
ClinVarLY6G6F
1000_GenomesLY6G6F 
Exome Variant ServerLY6G6F
ExAC (Exome Aggregation Consortium)LY6G6F (select the gene name)
Genetic variants : HAPMAP259215
Genomic Variants (DGV)LY6G6F [DGVbeta]
DECIPHER (Syndromes)6:31674684-31678372  ENSG00000204424
CONAN: Copy Number AnalysisLY6G6F 
Mutations
ICGC Data PortalLY6G6F 
TCGA Data PortalLY6G6F 
Broad Tumor PortalLY6G6F
OASIS PortalLY6G6F [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLY6G6F  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLY6G6F
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LY6G6F
DgiDB (Drug Gene Interaction Database)LY6G6F
DoCM (Curated mutations)LY6G6F (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LY6G6F (select a term)
intoGenLY6G6F
Cancer3DLY6G6F(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611404   
Orphanet
MedgenLY6G6F
Genetic Testing Registry LY6G6F
NextProtQ5SQ64 [Medical]
TSGene259215
GENETestsLY6G6F
Huge Navigator LY6G6F [HugePedia]
snp3D : Map Gene to Disease259215
BioCentury BCIQLY6G6F
ClinGenLY6G6F
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD259215
Chemical/Pharm GKB GenePA38371
Clinical trialLY6G6F
Miscellaneous
canSAR (ICR)LY6G6F (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLY6G6F
EVEXLY6G6F
GoPubMedLY6G6F
iHOPLY6G6F
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:27:23 CET 2017

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