Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LY6K (lymphocyte antigen 6 complex, locus K)

Identity

Other namesCT97
HSJ001348
ly-6K
HGNC (Hugo) LY6K
LocusID (NCBI) 54742
Location 8q24.3
Location_base_pair Starts at 143781529 and ends at 143785584 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LY6K   24225
Entrez_Gene (NCBI)LY6K  54742  lymphocyte antigen 6 complex, locus K
Cards
GeneCards (Weizmann)LY6K
Ensembl (Hinxton)ENSG00000160886 [Gene_View]  chr8:143781529-143785584 [Contig_View]  LY6K [Vega]
AceView (NCBI)LY6K
Genatlas (Paris)LY6K
SOURCE (Stanford)NM_001160354 NM_001160355 NM_017527
Genomic and cartography
GoldenPath (UCSC)LY6K  -  8q24.3   chr8:143781529-143785584 +  8q24.3   [Description]    (hg19-Feb_2009)
EnsemblLY6K - 8q24.3 [CytoView]
Mapping of homologs : NCBILY6K [Mapview]
Gene and transcription
Genbank (Entrez)AI740834 AJ001348 AK092545 BC001291 BC117142
RefSeq transcript (SRS)NM_001160354 NM_001160355 NM_017527
RefSeq transcript (Entrez)NM_001160354 NM_001160355 NM_017527
RefSeq genomic (SRS)AC_000140 NC_000008 NC_018919 NT_008046 NW_001839142 NW_003871066 NW_004078037
RefSeq genomic (Entrez)AC_000140 NC_000008 NC_018919 NT_008046 NW_001839142 NW_003871066 NW_004078037
Consensus coding sequences : CCDS (NCBI)LY6K
Cluster EST : UnigeneHs.716823 [ SRS ] Hs.716823 [ NCBI ]
CGAP (NCI)Hs.716823
Alternative Splicing : Fast-db (Paris)GSHG0029286
Alternative Splicing GalleryENSG00000160886
Gene ExpressionLY6K [ NCBI-GEO ]   LY6K [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ17RY6 (SRS) Q17RY6 (Uniprot)
NextProtQ17RY6
With graphics : InterProQ17RY6
Splice isoforms : SwissVarQ17RY6(Swissvar)
Related proteins : CluSTrQ17RY6
Domain families : Pfam (SRS)
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM54742
Blocks (Seattle)Q17RY6
Human Protein AtlasENSG00000160886
HPRD17457
IPIIPI00930400   IPI00023480   IPI00982360   IPI00789443   IPI01015671   
Protein Interaction databases
DIP (DOE-UCLA)Q17RY6
IntAct (EBI)Q17RY6
FunCoupENSG00000160886
REACTOMELY6K
Protein Interaction Database54742
BioGRIDLY6K
InParanoidQ17RY6
Interologous Interaction database Q17RY6
IntegromeDBLY6K
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)LY6K
SNP (GeneSNP Utah)LY6K
SNP : HGBaseLY6K
Genetic variants : HAPMAPLY6K
Somatic Mutations in Cancer : COSMICLY6K 
CONAN: Copy Number AnalysisLY6K 
Mutations and Diseases : HGMDLY6K
OMIM
GENETests
Disease Genetic AssociationLY6K
Huge Navigator LY6K [HugePedia]  LY6K [HugeCancerGEM]
Genomic VariantsLY6K  LY6K [DGVbeta]
snp3D : Map Gene to Disease54742
General knowledge
Homologs : HomoloGeneLY6K
Homology/Alignments : Family Browser (UCSC)LY6K
Phylogenetic Trees/Animal Genes : TreeFamLY6K
Chemical/Protein Interactions : CTD54742
Chemical/Pharm GKB GenePA134987940
Clinical trialLY6K
Cancer Resource (Charite)ENSG00000160886
Ontology : AmiGOextracellular region  nucleus  nucleolus  cytoplasm  plasma membrane  anchored to membrane  
Ontology : EGO-EBIextracellular region  nucleus  nucleolus  cytoplasm  plasma membrane  anchored to membrane  
Other databases
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
PubGeneLY6K
iHOPLY6K
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:44:52 CEST 2013
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