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LY6K (lymphocyte antigen 6 complex, locus K)

Identity

Alias_symbol (synonym)HSJ001348
FLJ35226
CT97
Other aliasURLC10
ly-6K
HGNC (Hugo) LY6K
LocusID (NCBI) 54742
Atlas_Id 49996
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 143781529 and ends at 143785584 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LY6K   24225
Cards
Entrez_Gene (NCBI)LY6K  54742  lymphocyte antigen 6 complex, locus K
AliasesCT97; HSJ001348; URLC10; ly-6K
GeneCards (Weizmann)LY6K
Ensembl hg19 (Hinxton)ENSG00000160886 [Gene_View]  chr8:143781529-143785584 [Contig_View]  LY6K [Vega]
Ensembl hg38 (Hinxton)ENSG00000160886 [Gene_View]  chr8:143781529-143785584 [Contig_View]  LY6K [Vega]
ICGC DataPortalENSG00000160886
TCGA cBioPortalLY6K
AceView (NCBI)LY6K
Genatlas (Paris)LY6K
WikiGenes54742
SOURCE (Princeton)LY6K
Genetics Home Reference (NIH)LY6K
Genomic and cartography
GoldenPath hg19 (UCSC)LY6K  -     chr8:143781529-143785584 +  8q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LY6K  -     8q24.3   [Description]    (hg38-Dec_2013)
EnsemblLY6K - 8q24.3 [CytoView hg19]  LY6K - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBILY6K [Mapview hg19]  LY6K [Mapview hg38]
OMIM615093   
Gene and transcription
Genbank (Entrez)AB105187 AI740834 AJ001348 AK092545 BC001291
RefSeq transcript (Entrez)NM_001160354 NM_001160355 NM_017527
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008046 NW_004929340
Consensus coding sequences : CCDS (NCBI)LY6K
Cluster EST : UnigeneHs.716823 [ NCBI ]
CGAP (NCI)Hs.716823
Alternative Splicing GalleryENSG00000160886
Gene ExpressionLY6K [ NCBI-GEO ]   LY6K [ EBI - ARRAY_EXPRESS ]   LY6K [ SEEK ]   LY6K [ MEM ]
Gene Expression Viewer (FireBrowse)LY6K [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54742
GTEX Portal (Tissue expression)LY6K
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ17RY6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ17RY6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ17RY6
Splice isoforms : SwissVarQ17RY6
PhosPhoSitePlusQ17RY6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LY6K
DMDM Disease mutations54742
Blocks (Seattle)LY6K
SuperfamilyQ17RY6
Human Protein AtlasENSG00000160886
Peptide AtlasQ17RY6
HPRD17457
IPIIPI00930400   IPI00023480   IPI00982360   IPI00789443   IPI01015671   
Protein Interaction databases
DIP (DOE-UCLA)Q17RY6
IntAct (EBI)Q17RY6
FunCoupENSG00000160886
BioGRIDLY6K
STRING (EMBL)LY6K
ZODIACLY6K
Ontologies - Pathways
QuickGOQ17RY6
Ontology : AmiGOextracellular region  cytoplasm  plasma membrane  anchored component of membrane  
Ontology : EGO-EBIextracellular region  cytoplasm  plasma membrane  anchored component of membrane  
NDEx NetworkLY6K
Atlas of Cancer Signalling NetworkLY6K
Wikipedia pathwaysLY6K
Orthology - Evolution
OrthoDB54742
GeneTree (enSembl)ENSG00000160886
Phylogenetic Trees/Animal Genes : TreeFamLY6K
HOVERGENQ17RY6
HOGENOMQ17RY6
Homologs : HomoloGeneLY6K
Homology/Alignments : Family Browser (UCSC)LY6K
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLY6K [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LY6K
dbVarLY6K
ClinVarLY6K
1000_GenomesLY6K 
Exome Variant ServerLY6K
ExAC (Exome Aggregation Consortium)LY6K (select the gene name)
Genetic variants : HAPMAP54742
Genomic Variants (DGV)LY6K [DGVbeta]
DECIPHER (Syndromes)8:143781529-143785584  ENSG00000160886
CONAN: Copy Number AnalysisLY6K 
Mutations
ICGC Data PortalLY6K 
TCGA Data PortalLY6K 
Broad Tumor PortalLY6K
OASIS PortalLY6K [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLY6K  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLY6K
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LY6K
DgiDB (Drug Gene Interaction Database)LY6K
DoCM (Curated mutations)LY6K (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LY6K (select a term)
intoGenLY6K
Cancer3DLY6K(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615093   
Orphanet
MedgenLY6K
Genetic Testing Registry LY6K
NextProtQ17RY6 [Medical]
TSGene54742
GENETestsLY6K
Huge Navigator LY6K [HugePedia]
snp3D : Map Gene to Disease54742
BioCentury BCIQLY6K
ClinGenLY6K
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54742
Chemical/Pharm GKB GenePA134987940
Clinical trialLY6K
Miscellaneous
canSAR (ICR)LY6K (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLY6K
EVEXLY6K
GoPubMedLY6K
iHOPLY6K
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:08:06 CEST 2017

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