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LY86 (lymphocyte antigen 86)

Identity

Alias_symbol (synonym)MD-1
dJ80N2.1
Other aliasMD1
MMD-1
HGNC (Hugo) LY86
LocusID (NCBI) 9450
Atlas_Id 56351
Location 6p25.1  [Link to chromosome band 6p25]
Location_base_pair Starts at 6588701 and ends at 6654983 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LY86   16837
Cards
Entrez_Gene (NCBI)LY86  9450  lymphocyte antigen 86
AliasesMD-1; MD1; MMD-1; dJ80N2.1
GeneCards (Weizmann)LY86
Ensembl hg19 (Hinxton)ENSG00000112799 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112799 [Gene_View]  ENSG00000112799 [Sequence]  chr6:6588701-6654983 [Contig_View]  LY86 [Vega]
ICGC DataPortalENSG00000112799
TCGA cBioPortalLY86
AceView (NCBI)LY86
Genatlas (Paris)LY86
WikiGenes9450
SOURCE (Princeton)LY86
Genetics Home Reference (NIH)LY86
Genomic and cartography
GoldenPath hg38 (UCSC)LY86  -     chr6:6588701-6654983 +  6p25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LY86  -     6p25.1   [Description]    (hg19-Feb_2009)
EnsemblLY86 - 6p25.1 [CytoView hg19]  LY86 - 6p25.1 [CytoView hg38]
Mapping of homologs : NCBILY86 [Mapview hg19]  LY86 [Mapview hg38]
OMIM605241   
Gene and transcription
Genbank (Entrez)AB020499 AF057178 AY931019 BC038846 CD695164
RefSeq transcript (Entrez)NM_004271
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LY86
Cluster EST : UnigeneHs.653138 [ NCBI ]
CGAP (NCI)Hs.653138
Alternative Splicing GalleryENSG00000112799
Gene ExpressionLY86 [ NCBI-GEO ]   LY86 [ EBI - ARRAY_EXPRESS ]   LY86 [ SEEK ]   LY86 [ MEM ]
Gene Expression Viewer (FireBrowse)LY86 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9450
GTEX Portal (Tissue expression)LY86
Human Protein AtlasENSG00000112799-LY86 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95711   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95711  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95711
Splice isoforms : SwissVarO95711
PhosPhoSitePlusO95711
Domains : Interpro (EBI)Ig_E-set    ML_dom   
Domain families : Pfam (Sanger)E1_DerP2_DerF2 (PF02221)   
Domain families : Pfam (NCBI)pfam02221   
Domain families : Smart (EMBL)ML (SM00737)  
Conserved Domain (NCBI)LY86
DMDM Disease mutations9450
Blocks (Seattle)LY86
PDB (SRS)3B2D   
PDB (PDBSum)3B2D   
PDB (IMB)3B2D   
PDB (RSDB)3B2D   
Structural Biology KnowledgeBase3B2D   
SCOP (Structural Classification of Proteins)3B2D   
CATH (Classification of proteins structures)3B2D   
SuperfamilyO95711
Human Protein Atlas [tissue]ENSG00000112799-LY86 [tissue]
Peptide AtlasO95711
HPRD05578
IPIIPI00003564   IPI00844192   
Protein Interaction databases
DIP (DOE-UCLA)O95711
IntAct (EBI)O95711
FunCoupENSG00000112799
BioGRIDLY86
STRING (EMBL)LY86
ZODIACLY86
Ontologies - Pathways
QuickGOO95711
Ontology : AmiGOprotein binding  extracellular space  plasma membrane  apoptotic process  inflammatory response  humoral immune response  cell proliferation  positive regulation of lipopolysaccharide-mediated signaling pathway  innate immune response  
Ontology : EGO-EBIprotein binding  extracellular space  plasma membrane  apoptotic process  inflammatory response  humoral immune response  cell proliferation  positive regulation of lipopolysaccharide-mediated signaling pathway  innate immune response  
NDEx NetworkLY86
Atlas of Cancer Signalling NetworkLY86
Wikipedia pathwaysLY86
Orthology - Evolution
OrthoDB9450
GeneTree (enSembl)ENSG00000112799
Phylogenetic Trees/Animal Genes : TreeFamLY86
HOVERGENO95711
HOGENOMO95711
Homologs : HomoloGeneLY86
Homology/Alignments : Family Browser (UCSC)LY86
Gene fusions - Rearrangements
Fusion : QuiverLY86
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLY86 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LY86
dbVarLY86
ClinVarLY86
1000_GenomesLY86 
Exome Variant ServerLY86
ExAC (Exome Aggregation Consortium)ENSG00000112799
GNOMAD BrowserENSG00000112799
Varsome BrowserLY86
Genetic variants : HAPMAP9450
Genomic Variants (DGV)LY86 [DGVbeta]
DECIPHERLY86 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLY86 
Mutations
ICGC Data PortalLY86 
TCGA Data PortalLY86 
Broad Tumor PortalLY86
OASIS PortalLY86 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLY86  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLY86
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LY86
DgiDB (Drug Gene Interaction Database)LY86
DoCM (Curated mutations)LY86 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LY86 (select a term)
intoGenLY86
Cancer3DLY86(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605241   
Orphanet
DisGeNETLY86
MedgenLY86
Genetic Testing Registry LY86
NextProtO95711 [Medical]
TSGene9450
GENETestsLY86
Target ValidationLY86
Huge Navigator LY86 [HugePedia]
snp3D : Map Gene to Disease9450
BioCentury BCIQLY86
ClinGenLY86
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9450
Chemical/Pharm GKB GenePA128394549
Clinical trialLY86
Miscellaneous
canSAR (ICR)LY86 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLY86
EVEXLY86
GoPubMedLY86
iHOPLY86
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:18:13 CET 2018

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