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LY9 (lymphocyte antigen 9)

Identity

Alias_symbol (synonym)CD229
mLY9
SLAMF3
hly9
Other alias
HGNC (Hugo) LY9
LocusID (NCBI) 4063
Atlas_Id 54925
Location 1q23.3  [Link to chromosome band 1q23]
Location_base_pair Starts at 160796074 and ends at 160828255 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LY9   6730
Cards
Entrez_Gene (NCBI)LY9  4063  lymphocyte antigen 9
AliasesCD229; SLAMF3; hly9; mLY9
GeneCards (Weizmann)LY9
Ensembl hg19 (Hinxton)ENSG00000122224 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122224 [Gene_View]  ENSG00000122224 [Sequence]  chr1:160796074-160828255 [Contig_View]  LY9 [Vega]
ICGC DataPortalENSG00000122224
TCGA cBioPortalLY9
AceView (NCBI)LY9
Genatlas (Paris)LY9
WikiGenes4063
SOURCE (Princeton)LY9
Genetics Home Reference (NIH)LY9
Genomic and cartography
GoldenPath hg38 (UCSC)LY9  -     chr1:160796074-160828255 +  1q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LY9  -     1q23.3   [Description]    (hg19-Feb_2009)
EnsemblLY9 - 1q23.3 [CytoView hg19]  LY9 - 1q23.3 [CytoView hg38]
Mapping of homologs : NCBILY9 [Mapview hg19]  LY9 [Mapview hg38]
OMIM600684   
Gene and transcription
Genbank (Entrez)AF055708 AF055709 AF244129 AI378426 AK128573
RefSeq transcript (Entrez)NM_001033667 NM_001261456 NM_001261457 NM_002348
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LY9
Cluster EST : UnigeneHs.403857 [ NCBI ]
CGAP (NCI)Hs.403857
Alternative Splicing GalleryENSG00000122224
Gene ExpressionLY9 [ NCBI-GEO ]   LY9 [ EBI - ARRAY_EXPRESS ]   LY9 [ SEEK ]   LY9 [ MEM ]
Gene Expression Viewer (FireBrowse)LY9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4063
GTEX Portal (Tissue expression)LY9
Human Protein AtlasENSG00000122224-LY9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HBG7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HBG7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HBG7
Splice isoforms : SwissVarQ9HBG7
PhosPhoSitePlusQ9HBG7
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)LY9
DMDM Disease mutations4063
Blocks (Seattle)LY9
SuperfamilyQ9HBG7
Human Protein Atlas [tissue]ENSG00000122224-LY9 [tissue]
Peptide AtlasQ9HBG7
HPRD02817
IPIIPI00215875   IPI00795912   IPI01012467   IPI00983690   IPI00183782   IPI00641653   IPI00646650   IPI00296369   IPI00440193   
Protein Interaction databases
DIP (DOE-UCLA)Q9HBG7
IntAct (EBI)Q9HBG7
FunCoupENSG00000122224
BioGRIDLY9
STRING (EMBL)LY9
ZODIACLY9
Ontologies - Pathways
QuickGOQ9HBG7
Ontology : AmiGOmolecular_function  plasma membrane  cell adhesion  cell surface  integral component of membrane  positive regulation of interleukin-17 production  innate immune response  T-helper 17 cell lineage commitment  
Ontology : EGO-EBImolecular_function  plasma membrane  cell adhesion  cell surface  integral component of membrane  positive regulation of interleukin-17 production  innate immune response  T-helper 17 cell lineage commitment  
NDEx NetworkLY9
Atlas of Cancer Signalling NetworkLY9
Wikipedia pathwaysLY9
Orthology - Evolution
OrthoDB4063
GeneTree (enSembl)ENSG00000122224
Phylogenetic Trees/Animal Genes : TreeFamLY9
HOVERGENQ9HBG7
HOGENOMQ9HBG7
Homologs : HomoloGeneLY9
Homology/Alignments : Family Browser (UCSC)LY9
Gene fusions - Rearrangements
Fusion : QuiverLY9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLY9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LY9
dbVarLY9
ClinVarLY9
1000_GenomesLY9 
Exome Variant ServerLY9
ExAC (Exome Aggregation Consortium)ENSG00000122224
GNOMAD BrowserENSG00000122224
Genetic variants : HAPMAP4063
Genomic Variants (DGV)LY9 [DGVbeta]
DECIPHERLY9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLY9 
Mutations
ICGC Data PortalLY9 
TCGA Data PortalLY9 
Broad Tumor PortalLY9
OASIS PortalLY9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLY9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLY9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LY9
DgiDB (Drug Gene Interaction Database)LY9
DoCM (Curated mutations)LY9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LY9 (select a term)
intoGenLY9
Cancer3DLY9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600684   
Orphanet
DisGeNETLY9
MedgenLY9
Genetic Testing Registry LY9
NextProtQ9HBG7 [Medical]
TSGene4063
GENETestsLY9
Target ValidationLY9
Huge Navigator LY9 [HugePedia]
snp3D : Map Gene to Disease4063
BioCentury BCIQLY9
ClinGenLY9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4063
Chemical/Pharm GKB GenePA30494
Clinical trialLY9
Miscellaneous
canSAR (ICR)LY9 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLY9
EVEXLY9
GoPubMedLY9
iHOPLY9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 22 16:34:27 CEST 2018

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