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LYAR (Ly1 antibody reactive)

Identity

Alias_namesLy1 antibody reactive homolog (mouse)
Alias_symbol (synonym)ZC2HC2
ZLYAR
Other alias
HGNC (Hugo) LYAR
LocusID (NCBI) 55646
Atlas_Id 55513
Location 4p16.3  [Link to chromosome band 4p16]
Location_base_pair Starts at 4269429 and ends at 4291748 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DHRS12 (13q14.3) / LYAR (4p16.3)LYAR (4p16.3) / COL6A3 (2q37.3)LYAR (4p16.3) / LYAR (4p16.3)
NCAPG2 (7q36.3) / LYAR (4p16.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LYAR   26021
Cards
Entrez_Gene (NCBI)LYAR  55646  Ly1 antibody reactive
AliasesZC2HC2; ZLYAR
GeneCards (Weizmann)LYAR
Ensembl hg19 (Hinxton)ENSG00000145220 [Gene_View]  chr4:4269429-4291748 [Contig_View]  LYAR [Vega]
Ensembl hg38 (Hinxton)ENSG00000145220 [Gene_View]  chr4:4269429-4291748 [Contig_View]  LYAR [Vega]
ICGC DataPortalENSG00000145220
TCGA cBioPortalLYAR
AceView (NCBI)LYAR
Genatlas (Paris)LYAR
WikiGenes55646
SOURCE (Princeton)LYAR
Genetics Home Reference (NIH)LYAR
Genomic and cartography
GoldenPath hg19 (UCSC)LYAR  -     chr4:4269429-4291748 -  4p16.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LYAR  -     4p16.3   [Description]    (hg38-Dec_2013)
EnsemblLYAR - 4p16.3 [CytoView hg19]  LYAR - 4p16.3 [CytoView hg38]
Mapping of homologs : NCBILYAR [Mapview hg19]  LYAR [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF229835 AI418609 AK000432 AK290750 AL136750
RefSeq transcript (Entrez)NM_001145725 NM_017816
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006051 NW_004929314
Consensus coding sequences : CCDS (NCBI)LYAR
Cluster EST : UnigeneHs.425427 [ NCBI ]
CGAP (NCI)Hs.425427
Alternative Splicing GalleryENSG00000145220
Gene ExpressionLYAR [ NCBI-GEO ]   LYAR [ EBI - ARRAY_EXPRESS ]   LYAR [ SEEK ]   LYAR [ MEM ]
Gene Expression Viewer (FireBrowse)LYAR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55646
GTEX Portal (Tissue expression)LYAR
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NX58   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NX58  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NX58
Splice isoforms : SwissVarQ9NX58
PhosPhoSitePlusQ9NX58
Domains : Interpro (EBI)Znf_C2H2_LYAR   
Domain families : Pfam (Sanger)zf-LYAR (PF08790)   
Domain families : Pfam (NCBI)pfam08790   
Conserved Domain (NCBI)LYAR
DMDM Disease mutations55646
Blocks (Seattle)LYAR
SuperfamilyQ9NX58
Human Protein AtlasENSG00000145220
Peptide AtlasQ9NX58
HPRD10064
IPIIPI00015838   IPI00965902   
Protein Interaction databases
DIP (DOE-UCLA)Q9NX58
IntAct (EBI)Q9NX58
FunCoupENSG00000145220
BioGRIDLYAR
STRING (EMBL)LYAR
ZODIACLYAR
Ontologies - Pathways
QuickGOQ9NX58
Ontology : AmiGOprotein binding  nucleus  nucleolus  poly(A) RNA binding  metal ion binding  
Ontology : EGO-EBIprotein binding  nucleus  nucleolus  poly(A) RNA binding  metal ion binding  
NDEx NetworkLYAR
Atlas of Cancer Signalling NetworkLYAR
Wikipedia pathwaysLYAR
Orthology - Evolution
OrthoDB55646
GeneTree (enSembl)ENSG00000145220
Phylogenetic Trees/Animal Genes : TreeFamLYAR
HOVERGENQ9NX58
HOGENOMQ9NX58
Homologs : HomoloGeneLYAR
Homology/Alignments : Family Browser (UCSC)LYAR
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLYAR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LYAR
dbVarLYAR
ClinVarLYAR
1000_GenomesLYAR 
Exome Variant ServerLYAR
ExAC (Exome Aggregation Consortium)LYAR (select the gene name)
Genetic variants : HAPMAP55646
Genomic Variants (DGV)LYAR [DGVbeta]
DECIPHER (Syndromes)4:4269429-4291748  ENSG00000145220
CONAN: Copy Number AnalysisLYAR 
Mutations
ICGC Data PortalLYAR 
TCGA Data PortalLYAR 
Broad Tumor PortalLYAR
OASIS PortalLYAR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLYAR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLYAR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LYAR
DgiDB (Drug Gene Interaction Database)LYAR
DoCM (Curated mutations)LYAR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LYAR (select a term)
intoGenLYAR
Cancer3DLYAR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLYAR
Genetic Testing Registry LYAR
NextProtQ9NX58 [Medical]
TSGene55646
GENETestsLYAR
Huge Navigator LYAR [HugePedia]
snp3D : Map Gene to Disease55646
BioCentury BCIQLYAR
ClinGenLYAR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55646
Chemical/Pharm GKB GenePA162394697
Clinical trialLYAR
Miscellaneous
canSAR (ICR)LYAR (select the gene name)
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLYAR
EVEXLYAR
GoPubMedLYAR
iHOPLYAR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:14:01 CET 2017

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