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LYG1 (lysozyme g1)

Identity

Alias_nameslysozyme G-like 1
Alias_symbol (synonym)SALW1939
Other alias
HGNC (Hugo) LYG1
LocusID (NCBI) 129530
Atlas_Id 68714
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 99284238 and ends at 99301176 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LYG1   27014
Cards
Entrez_Gene (NCBI)LYG1  129530  lysozyme g1
AliasesSALW1939
GeneCards (Weizmann)LYG1
Ensembl hg19 (Hinxton)ENSG00000144214 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144214 [Gene_View]  chr2:99284238-99301176 [Contig_View]  LYG1 [Vega]
ICGC DataPortalENSG00000144214
TCGA cBioPortalLYG1
AceView (NCBI)LYG1
Genatlas (Paris)LYG1
WikiGenes129530
SOURCE (Princeton)LYG1
Genetics Home Reference (NIH)LYG1
Genomic and cartography
GoldenPath hg38 (UCSC)LYG1  -     chr2:99284238-99301176 -  2q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LYG1  -     2q11.2   [Description]    (hg19-Feb_2009)
EnsemblLYG1 - 2q11.2 [CytoView hg19]  LYG1 - 2q11.2 [CytoView hg38]
Mapping of homologs : NCBILYG1 [Mapview hg19]  LYG1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY358988 BC029126 BG194505 EU831820 EU831897
RefSeq transcript (Entrez)NM_174898
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LYG1
Cluster EST : UnigeneHs.164589 [ NCBI ]
CGAP (NCI)Hs.164589
Alternative Splicing GalleryENSG00000144214
Gene ExpressionLYG1 [ NCBI-GEO ]   LYG1 [ EBI - ARRAY_EXPRESS ]   LYG1 [ SEEK ]   LYG1 [ MEM ]
Gene Expression Viewer (FireBrowse)LYG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)129530
GTEX Portal (Tissue expression)LYG1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N1E2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N1E2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N1E2
Splice isoforms : SwissVarQ8N1E2
Catalytic activity : Enzyme3.2.1.- [ Enzyme-Expasy ]   3.2.1.-3.2.1.- [ IntEnz-EBI ]   3.2.1.- [ BRENDA ]   3.2.1.- [ KEGG ]   
PhosPhoSitePlusQ8N1E2
Domains : Interpro (EBI)Glyco_hydro_23    Lysozyme-like_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LYG1
DMDM Disease mutations129530
Blocks (Seattle)LYG1
SuperfamilyQ8N1E2
Human Protein AtlasENSG00000144214
Peptide AtlasQ8N1E2
HPRD14043
IPIIPI00166144   
Protein Interaction databases
DIP (DOE-UCLA)Q8N1E2
IntAct (EBI)Q8N1E2
FunCoupENSG00000144214
BioGRIDLYG1
STRING (EMBL)LYG1
ZODIACLYG1
Ontologies - Pathways
QuickGOQ8N1E2
Ontology : AmiGOlysozyme activity  extracellular region  peptidoglycan catabolic process  cell wall macromolecule catabolic process  
Ontology : EGO-EBIlysozyme activity  extracellular region  peptidoglycan catabolic process  cell wall macromolecule catabolic process  
NDEx NetworkLYG1
Atlas of Cancer Signalling NetworkLYG1
Wikipedia pathwaysLYG1
Orthology - Evolution
OrthoDB129530
GeneTree (enSembl)ENSG00000144214
Phylogenetic Trees/Animal Genes : TreeFamLYG1
HOVERGENQ8N1E2
HOGENOMQ8N1E2
Homologs : HomoloGeneLYG1
Homology/Alignments : Family Browser (UCSC)LYG1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLYG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LYG1
dbVarLYG1
ClinVarLYG1
1000_GenomesLYG1 
Exome Variant ServerLYG1
ExAC (Exome Aggregation Consortium)LYG1 (select the gene name)
Genetic variants : HAPMAP129530
Genomic Variants (DGV)LYG1 [DGVbeta]
DECIPHERLYG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLYG1 
Mutations
ICGC Data PortalLYG1 
TCGA Data PortalLYG1 
Broad Tumor PortalLYG1
OASIS PortalLYG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLYG1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLYG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LYG1
DgiDB (Drug Gene Interaction Database)LYG1
DoCM (Curated mutations)LYG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LYG1 (select a term)
intoGenLYG1
Cancer3DLYG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLYG1
Genetic Testing Registry LYG1
NextProtQ8N1E2 [Medical]
TSGene129530
GENETestsLYG1
Target ValidationLYG1
Huge Navigator LYG1 [HugePedia]
snp3D : Map Gene to Disease129530
BioCentury BCIQLYG1
ClinGenLYG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD129530
Chemical/Pharm GKB GenePA162394698
Clinical trialLYG1
Miscellaneous
canSAR (ICR)LYG1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLYG1
EVEXLYG1
GoPubMedLYG1
iHOPLYG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:26:44 CEST 2017

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