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LYG2 (lysozyme G-like 2)

Identity

Alias_nameslysozyme G-like 2
Alias_symbol (synonym)LYGH
Other alias
HGNC (Hugo) LYG2
LocusID (NCBI) 254773
Atlas_Id 68715
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 99858711 and ends at 99871570 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LYG2   29615
Cards
Entrez_Gene (NCBI)LYG2  254773  lysozyme G-like 2
AliasesLYGH
GeneCards (Weizmann)LYG2
Ensembl hg19 (Hinxton)ENSG00000185674 [Gene_View]  chr2:99858711-99871570 [Contig_View]  LYG2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000185674 [Gene_View]  chr2:99858711-99871570 [Contig_View]  LYG2 [Vega]
ICGC DataPortalENSG00000185674
TCGA cBioPortalLYG2
AceView (NCBI)LYG2
Genatlas (Paris)LYG2
WikiGenes254773
SOURCE (Princeton)LYG2
Genetics Home Reference (NIH)LYG2
Genomic and cartography
GoldenPath hg19 (UCSC)LYG2  -     chr2:99858711-99871570 -  2q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LYG2  -     2q11.2   [Description]    (hg38-Dec_2013)
EnsemblLYG2 - 2q11.2 [CytoView hg19]  LYG2 - 2q11.2 [CytoView hg38]
Mapping of homologs : NCBILYG2 [Mapview hg19]  LYG2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF323919 AY026238 BC100882 BC100883 BC100884
RefSeq transcript (Entrez)NM_175735
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929303
Consensus coding sequences : CCDS (NCBI)LYG2
Cluster EST : UnigeneHs.436468 [ NCBI ]
CGAP (NCI)Hs.436468
Alternative Splicing GalleryENSG00000185674
Gene ExpressionLYG2 [ NCBI-GEO ]   LYG2 [ EBI - ARRAY_EXPRESS ]   LYG2 [ SEEK ]   LYG2 [ MEM ]
Gene Expression Viewer (FireBrowse)LYG2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)254773
GTEX Portal (Tissue expression)LYG2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86SG7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86SG7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86SG7
Splice isoforms : SwissVarQ86SG7
Catalytic activity : Enzyme3.2.1.- [ Enzyme-Expasy ]   3.2.1.-3.2.1.- [ IntEnz-EBI ]   3.2.1.- [ BRENDA ]   3.2.1.- [ KEGG ]   
PhosPhoSitePlusQ86SG7
Domains : Interpro (EBI)Glyco_hydro_23    Lysozyme-like_dom    TGlycosylase-like_SLT   
Domain families : Pfam (Sanger)SLT (PF01464)   
Domain families : Pfam (NCBI)pfam01464   
Conserved Domain (NCBI)LYG2
DMDM Disease mutations254773
Blocks (Seattle)LYG2
SuperfamilyQ86SG7
Human Protein AtlasENSG00000185674
Peptide AtlasQ86SG7
HPRD14331
IPIIPI00328398   IPI00916561   IPI00916688   IPI00916975   
Protein Interaction databases
DIP (DOE-UCLA)Q86SG7
IntAct (EBI)Q86SG7
FunCoupENSG00000185674
BioGRIDLYG2
STRING (EMBL)LYG2
ZODIACLYG2
Ontologies - Pathways
QuickGOQ86SG7
Ontology : AmiGOlysozyme activity  extracellular region  peptidoglycan catabolic process  cell wall macromolecule catabolic process  
Ontology : EGO-EBIlysozyme activity  extracellular region  peptidoglycan catabolic process  cell wall macromolecule catabolic process  
NDEx NetworkLYG2
Atlas of Cancer Signalling NetworkLYG2
Wikipedia pathwaysLYG2
Orthology - Evolution
OrthoDB254773
GeneTree (enSembl)ENSG00000185674
Phylogenetic Trees/Animal Genes : TreeFamLYG2
HOVERGENQ86SG7
HOGENOMQ86SG7
Homologs : HomoloGeneLYG2
Homology/Alignments : Family Browser (UCSC)LYG2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLYG2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LYG2
dbVarLYG2
ClinVarLYG2
1000_GenomesLYG2 
Exome Variant ServerLYG2
ExAC (Exome Aggregation Consortium)LYG2 (select the gene name)
Genetic variants : HAPMAP254773
Genomic Variants (DGV)LYG2 [DGVbeta]
DECIPHER (Syndromes)2:99858711-99871570  ENSG00000185674
CONAN: Copy Number AnalysisLYG2 
Mutations
ICGC Data PortalLYG2 
TCGA Data PortalLYG2 
Broad Tumor PortalLYG2
OASIS PortalLYG2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLYG2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLYG2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LYG2
DgiDB (Drug Gene Interaction Database)LYG2
DoCM (Curated mutations)LYG2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LYG2 (select a term)
intoGenLYG2
Cancer3DLYG2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLYG2
Genetic Testing Registry LYG2
NextProtQ86SG7 [Medical]
TSGene254773
GENETestsLYG2
Huge Navigator LYG2 [HugePedia]
snp3D : Map Gene to Disease254773
BioCentury BCIQLYG2
ClinGenLYG2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD254773
Chemical/Pharm GKB GenePA162394717
Clinical trialLYG2
Miscellaneous
canSAR (ICR)LYG2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLYG2
EVEXLYG2
GoPubMedLYG2
iHOPLYG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:27:24 CET 2017

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