Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LYNX1 (Ly6/neurotoxin 1)

Identity

Alias_symbol (synonym)SLURP2
Other alias-
HGNC (Hugo) LYNX1
LocusID (NCBI) 66004
Atlas_Id 43968
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 142771197 and ends at 142777328 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LYNX1   29604
Cards
Entrez_Gene (NCBI)LYNX1  66004  Ly6/neurotoxin 1
Aliases
GeneCards (Weizmann)LYNX1
Ensembl hg19 (Hinxton)ENSG00000180155 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180155 [Gene_View]  ENSG00000180155 [Sequence]  chr8:142771197-142777328 [Contig_View]  LYNX1 [Vega]
ICGC DataPortalENSG00000180155
TCGA cBioPortalLYNX1
AceView (NCBI)LYNX1
Genatlas (Paris)LYNX1
WikiGenes66004
SOURCE (Princeton)LYNX1
Genetics Home Reference (NIH)LYNX1
Genomic and cartography
GoldenPath hg38 (UCSC)LYNX1  -     chr8:142771197-142777328 -  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LYNX1  -     8q24.3   [Description]    (hg19-Feb_2009)
GoldenPathLYNX1 - 8q24.3 [CytoView hg19]  LYNX1 - 8q24.3 [CytoView hg38]
ImmunoBaseENSG00000180155
Mapping of homologs : NCBILYNX1 [Mapview hg19]  LYNX1 [Mapview hg38]
OMIM606110   
Gene and transcription
Genbank (Entrez)AF321824 AI494395 AK123335 AK126845 AL353948
RefSeq transcript (Entrez)NM_001356370 NM_177457 NM_177476 NM_177477
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LYNX1
Cluster EST : UnigeneHs.604828 [ NCBI ]
CGAP (NCI)Hs.604828
Alternative Splicing GalleryENSG00000180155
Gene ExpressionLYNX1 [ NCBI-GEO ]   LYNX1 [ EBI - ARRAY_EXPRESS ]   LYNX1 [ SEEK ]   LYNX1 [ MEM ]
Gene Expression Viewer (FireBrowse)LYNX1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)66004
GTEX Portal (Tissue expression)LYNX1
Human Protein AtlasENSG00000180155-LYNX1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LYNX1
DMDM Disease mutations66004
Blocks (Seattle)LYNX1
Human Protein Atlas [tissue]ENSG00000180155-LYNX1 [tissue]
HPRD16201
IPIIPI00219827   IPI00289058   IPI00982455   IPI00218851   IPI00980650   IPI00984181   IPI00794450   IPI00981301   
Protein Interaction databases
FunCoupENSG00000180155
BioGRIDLYNX1
STRING (EMBL)LYNX1
ZODIACLYNX1
Ontologies - Pathways
Huge Navigator LYNX1 [HugePedia]
snp3D : Map Gene to Disease66004
BioCentury BCIQLYNX1
ClinGenLYNX1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD66004
Chemical/Pharm GKB GenePA134874147
Clinical trialLYNX1
Miscellaneous
canSAR (ICR)LYNX1 (select the gene name)
DataMed IndexLYNX1
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLYNX1
EVEXLYNX1
GoPubMedLYNX1
iHOPLYNX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Aug 12 15:41:45 CEST 2019

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