Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LYPD1 (LY6/PLAUR domain containing 1)

Identity

Alias_namesLYPDC1
Alias_symbol (synonym)MGC29643
Other aliasPHTS
HGNC (Hugo) LYPD1
LocusID (NCBI) 116372
Atlas_Id 68716
Location 2q21.2  [Link to chromosome band 2q21]
Location_base_pair Starts at 132643280 and ends at 132671579 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LYPD1 (2q21.2) / NCKAP5 (2q21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LYPD1   28431
Cards
Entrez_Gene (NCBI)LYPD1  116372  LY6/PLAUR domain containing 1
AliasesLYPDC1; PHTS
GeneCards (Weizmann)LYPD1
Ensembl hg19 (Hinxton)ENSG00000150551 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000150551 [Gene_View]  chr2:132643280-132671579 [Contig_View]  LYPD1 [Vega]
ICGC DataPortalENSG00000150551
TCGA cBioPortalLYPD1
AceView (NCBI)LYPD1
Genatlas (Paris)LYPD1
WikiGenes116372
SOURCE (Princeton)LYPD1
Genetics Home Reference (NIH)LYPD1
Genomic and cartography
GoldenPath hg38 (UCSC)LYPD1  -     chr2:132643280-132671579 -  2q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LYPD1  -     2q21.2   [Description]    (hg19-Feb_2009)
EnsemblLYPD1 - 2q21.2 [CytoView hg19]  LYPD1 - 2q21.2 [CytoView hg38]
Mapping of homologs : NCBILYPD1 [Mapview hg19]  LYPD1 [Mapview hg38]
OMIM610450   
Gene and transcription
Genbank (Entrez)AI150931 AK075487 AK094501 AK123029 AK130005
RefSeq transcript (Entrez)NM_001077427 NM_001321234 NM_001321235 NM_144586
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LYPD1
Cluster EST : UnigeneHs.432395 [ NCBI ]
CGAP (NCI)Hs.432395
Alternative Splicing GalleryENSG00000150551
Gene ExpressionLYPD1 [ NCBI-GEO ]   LYPD1 [ EBI - ARRAY_EXPRESS ]   LYPD1 [ SEEK ]   LYPD1 [ MEM ]
Gene Expression Viewer (FireBrowse)LYPD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116372
GTEX Portal (Tissue expression)LYPD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N2G4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N2G4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N2G4
Splice isoforms : SwissVarQ8N2G4
PhosPhoSitePlusQ8N2G4
Domains : Interpro (EBI)SLURP1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LYPD1
DMDM Disease mutations116372
Blocks (Seattle)LYPD1
SuperfamilyQ8N2G4
Human Protein AtlasENSG00000150551
Peptide AtlasQ8N2G4
HPRD14333
IPIIPI00795481   IPI00807677   IPI00807397   IPI00383523   IPI00916589   
Protein Interaction databases
DIP (DOE-UCLA)Q8N2G4
IntAct (EBI)Q8N2G4
FunCoupENSG00000150551
BioGRIDLYPD1
STRING (EMBL)LYPD1
ZODIACLYPD1
Ontologies - Pathways
QuickGOQ8N2G4
Ontology : AmiGObehavioral fear response  cell activation  extracellular region  extracellular region  plasma membrane  C-terminal protein lipidation  synaptic transmission, cholinergic  acetylcholine receptor inhibitor activity  anchored component of membrane  acetylcholine receptor binding  response to nicotine  acetylcholine receptor signaling pathway  negative regulation of protein localization to plasma membrane  negative regulation of receptor activity  
Ontology : EGO-EBIbehavioral fear response  cell activation  extracellular region  extracellular region  plasma membrane  C-terminal protein lipidation  synaptic transmission, cholinergic  acetylcholine receptor inhibitor activity  anchored component of membrane  acetylcholine receptor binding  response to nicotine  acetylcholine receptor signaling pathway  negative regulation of protein localization to plasma membrane  negative regulation of receptor activity  
NDEx NetworkLYPD1
Atlas of Cancer Signalling NetworkLYPD1
Wikipedia pathwaysLYPD1
Orthology - Evolution
OrthoDB116372
GeneTree (enSembl)ENSG00000150551
Phylogenetic Trees/Animal Genes : TreeFamLYPD1
HOVERGENQ8N2G4
HOGENOMQ8N2G4
Homologs : HomoloGeneLYPD1
Homology/Alignments : Family Browser (UCSC)LYPD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLYPD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LYPD1
dbVarLYPD1
ClinVarLYPD1
1000_GenomesLYPD1 
Exome Variant ServerLYPD1
ExAC (Exome Aggregation Consortium)LYPD1 (select the gene name)
Genetic variants : HAPMAP116372
Genomic Variants (DGV)LYPD1 [DGVbeta]
DECIPHERLYPD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLYPD1 
Mutations
ICGC Data PortalLYPD1 
TCGA Data PortalLYPD1 
Broad Tumor PortalLYPD1
OASIS PortalLYPD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLYPD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLYPD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LYPD1
DgiDB (Drug Gene Interaction Database)LYPD1
DoCM (Curated mutations)LYPD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LYPD1 (select a term)
intoGenLYPD1
Cancer3DLYPD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610450   
Orphanet
MedgenLYPD1
Genetic Testing Registry LYPD1
NextProtQ8N2G4 [Medical]
TSGene116372
GENETestsLYPD1
Target ValidationLYPD1
Huge Navigator LYPD1 [HugePedia]
snp3D : Map Gene to Disease116372
BioCentury BCIQLYPD1
ClinGenLYPD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116372
Chemical/Pharm GKB GenePA134862471
Clinical trialLYPD1
Miscellaneous
canSAR (ICR)LYPD1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLYPD1
EVEXLYPD1
GoPubMedLYPD1
iHOPLYPD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:25:14 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.