Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LYPD2 (LY6/PLAUR domain containing 2)

Identity

Alias_namesLYPDC2
Alias_symbol (synonym)RGTR430
UNQ430
Other alias
HGNC (Hugo) LYPD2
LocusID (NCBI) 137797
Atlas_Id 68717
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 142750150 and ends at 142752534 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LYPD2   25215
Cards
Entrez_Gene (NCBI)LYPD2  137797  LY6/PLAUR domain containing 2
AliasesLYPDC2; UNQ430
GeneCards (Weizmann)LYPD2
Ensembl hg19 (Hinxton)ENSG00000197353 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197353 [Gene_View]  chr8:142750150-142752534 [Contig_View]  LYPD2 [Vega]
ICGC DataPortalENSG00000197353
TCGA cBioPortalLYPD2
AceView (NCBI)LYPD2
Genatlas (Paris)LYPD2
WikiGenes137797
SOURCE (Princeton)LYPD2
Genetics Home Reference (NIH)LYPD2
Genomic and cartography
GoldenPath hg38 (UCSC)LYPD2  -     chr8:142750150-142752534 -  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LYPD2  -     8q24.3   [Description]    (hg19-Feb_2009)
EnsemblLYPD2 - 8q24.3 [CytoView hg19]  LYPD2 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBILYPD2 [Mapview hg19]  LYPD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB593150 AK290331 AY358432 BC119019 BC119812
RefSeq transcript (Entrez)NM_205545
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LYPD2
Cluster EST : UnigeneHs.441280 [ NCBI ]
CGAP (NCI)Hs.441280
Alternative Splicing GalleryENSG00000197353
Gene ExpressionLYPD2 [ NCBI-GEO ]   LYPD2 [ EBI - ARRAY_EXPRESS ]   LYPD2 [ SEEK ]   LYPD2 [ MEM ]
Gene Expression Viewer (FireBrowse)LYPD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)137797
GTEX Portal (Tissue expression)LYPD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UXB3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UXB3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UXB3
Splice isoforms : SwissVarQ6UXB3
PhosPhoSitePlusQ6UXB3
Domaine pattern : Prosite (Expaxy)LY6_UPAR (PS00983)   
Domains : Interpro (EBI)CD59_antigen_CS    LY6_UPA_recep-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)LU (SM00134)  
Conserved Domain (NCBI)LYPD2
DMDM Disease mutations137797
Blocks (Seattle)LYPD2
SuperfamilyQ6UXB3
Human Protein AtlasENSG00000197353
Peptide AtlasQ6UXB3
HPRD14334
IPIIPI00066856   
Protein Interaction databases
DIP (DOE-UCLA)Q6UXB3
IntAct (EBI)Q6UXB3
FunCoupENSG00000197353
BioGRIDLYPD2
STRING (EMBL)LYPD2
ZODIACLYPD2
Ontologies - Pathways
QuickGOQ6UXB3
Ontology : AmiGOcell activation  extracellular region  extracellular region  plasma membrane  C-terminal protein lipidation  anchored component of membrane  extracellular exosome  
Ontology : EGO-EBIcell activation  extracellular region  extracellular region  plasma membrane  C-terminal protein lipidation  anchored component of membrane  extracellular exosome  
NDEx NetworkLYPD2
Atlas of Cancer Signalling NetworkLYPD2
Wikipedia pathwaysLYPD2
Orthology - Evolution
OrthoDB137797
GeneTree (enSembl)ENSG00000197353
Phylogenetic Trees/Animal Genes : TreeFamLYPD2
HOVERGENQ6UXB3
HOGENOMQ6UXB3
Homologs : HomoloGeneLYPD2
Homology/Alignments : Family Browser (UCSC)LYPD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLYPD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LYPD2
dbVarLYPD2
ClinVarLYPD2
1000_GenomesLYPD2 
Exome Variant ServerLYPD2
ExAC (Exome Aggregation Consortium)LYPD2 (select the gene name)
Genetic variants : HAPMAP137797
Genomic Variants (DGV)LYPD2 [DGVbeta]
DECIPHERLYPD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLYPD2 
Mutations
ICGC Data PortalLYPD2 
TCGA Data PortalLYPD2 
Broad Tumor PortalLYPD2
OASIS PortalLYPD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLYPD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLYPD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LYPD2
DgiDB (Drug Gene Interaction Database)LYPD2
DoCM (Curated mutations)LYPD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LYPD2 (select a term)
intoGenLYPD2
Cancer3DLYPD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLYPD2
Genetic Testing Registry LYPD2
NextProtQ6UXB3 [Medical]
TSGene137797
GENETestsLYPD2
Target ValidationLYPD2
Huge Navigator LYPD2 [HugePedia]
snp3D : Map Gene to Disease137797
BioCentury BCIQLYPD2
ClinGenLYPD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD137797
Chemical/Pharm GKB GenePA134911921
Clinical trialLYPD2
Miscellaneous
canSAR (ICR)LYPD2 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLYPD2
EVEXLYPD2
GoPubMedLYPD2
iHOPLYPD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:26:44 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.