Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LYPD4 (LY6/PLAUR domain containing 4)

Identity

Alias_symbol (synonym)MGC42718
Other aliasSMR
HGNC (Hugo) LYPD4
LocusID (NCBI) 147719
Atlas_Id 68718
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 41837074 and ends at 41843727 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CRTC1 (19p13.11) / LYPD4 (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LYPD4   28659
Cards
Entrez_Gene (NCBI)LYPD4  147719  LY6/PLAUR domain containing 4
AliasesSMR
GeneCards (Weizmann)LYPD4
Ensembl hg19 (Hinxton)ENSG00000273111 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000273111 [Gene_View]  chr19:41837074-41843727 [Contig_View]  LYPD4 [Vega]
ICGC DataPortalENSG00000273111
TCGA cBioPortalLYPD4
AceView (NCBI)LYPD4
Genatlas (Paris)LYPD4
WikiGenes147719
SOURCE (Princeton)LYPD4
Genetics Home Reference (NIH)LYPD4
Genomic and cartography
GoldenPath hg38 (UCSC)LYPD4  -     chr19:41837074-41843727 -  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LYPD4  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblLYPD4 - 19q13.2 [CytoView hg19]  LYPD4 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBILYPD4 [Mapview hg19]  LYPD4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK292305 AY358726 AY771680 BC034279 BC034629
RefSeq transcript (Entrez)NM_001291419 NM_173506
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LYPD4
Cluster EST : UnigeneHs.382361 [ NCBI ]
CGAP (NCI)Hs.382361
Alternative Splicing GalleryENSG00000273111
Gene ExpressionLYPD4 [ NCBI-GEO ]   LYPD4 [ EBI - ARRAY_EXPRESS ]   LYPD4 [ SEEK ]   LYPD4 [ MEM ]
Gene Expression Viewer (FireBrowse)LYPD4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147719
GTEX Portal (Tissue expression)LYPD4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UWN0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UWN0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UWN0
Splice isoforms : SwissVarQ6UWN0
PhosPhoSitePlusQ6UWN0
Domains : Interpro (EBI)LY6_UPA_recep-like   
Domain families : Pfam (Sanger)UPAR_LY6 (PF00021)   
Domain families : Pfam (NCBI)pfam00021   
Conserved Domain (NCBI)LYPD4
DMDM Disease mutations147719
Blocks (Seattle)LYPD4
SuperfamilyQ6UWN0
Human Protein AtlasENSG00000273111
Peptide AtlasQ6UWN0
HPRD14626
IPIIPI00413952   IPI00217892   
Protein Interaction databases
DIP (DOE-UCLA)Q6UWN0
IntAct (EBI)Q6UWN0
FunCoupENSG00000273111
BioGRIDLYPD4
STRING (EMBL)LYPD4
ZODIACLYPD4
Ontologies - Pathways
QuickGOQ6UWN0
Ontology : AmiGOextracellular region  plasma membrane  C-terminal protein lipidation  anchored component of membrane  
Ontology : EGO-EBIextracellular region  plasma membrane  C-terminal protein lipidation  anchored component of membrane  
NDEx NetworkLYPD4
Atlas of Cancer Signalling NetworkLYPD4
Wikipedia pathwaysLYPD4
Orthology - Evolution
OrthoDB147719
GeneTree (enSembl)ENSG00000273111
Phylogenetic Trees/Animal Genes : TreeFamLYPD4
HOVERGENQ6UWN0
HOGENOMQ6UWN0
Homologs : HomoloGeneLYPD4
Homology/Alignments : Family Browser (UCSC)LYPD4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLYPD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LYPD4
dbVarLYPD4
ClinVarLYPD4
1000_GenomesLYPD4 
Exome Variant ServerLYPD4
ExAC (Exome Aggregation Consortium)LYPD4 (select the gene name)
Genetic variants : HAPMAP147719
Genomic Variants (DGV)LYPD4 [DGVbeta]
DECIPHERLYPD4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLYPD4 
Mutations
ICGC Data PortalLYPD4 
TCGA Data PortalLYPD4 
Broad Tumor PortalLYPD4
OASIS PortalLYPD4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLYPD4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLYPD4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LYPD4
DgiDB (Drug Gene Interaction Database)LYPD4
DoCM (Curated mutations)LYPD4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LYPD4 (select a term)
intoGenLYPD4
Cancer3DLYPD4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLYPD4
Genetic Testing Registry LYPD4
NextProtQ6UWN0 [Medical]
TSGene147719
GENETestsLYPD4
Target ValidationLYPD4
Huge Navigator LYPD4 [HugePedia]
snp3D : Map Gene to Disease147719
BioCentury BCIQLYPD4
ClinGenLYPD4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147719
Chemical/Pharm GKB GenePA142671491
Clinical trialLYPD4
Miscellaneous
canSAR (ICR)LYPD4 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLYPD4
EVEXLYPD4
GoPubMedLYPD4
iHOPLYPD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:25:14 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.