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LYPD5 (LY6/PLAUR domain containing 5)

Identity

Alias_symbol (synonym)FLJ30469
Other aliasPRO4356
HGNC (Hugo) LYPD5
LocusID (NCBI) 284348
Atlas_Id 68719
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 43795927 and ends at 43802461 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MARK4 (19q13.32) / LYPD5 (19q13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LYPD5   26397
Cards
Entrez_Gene (NCBI)LYPD5  284348  LY6/PLAUR domain containing 5
AliasesPRO4356
GeneCards (Weizmann)LYPD5
Ensembl hg19 (Hinxton)ENSG00000159871 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159871 [Gene_View]  chr19:43795927-43802461 [Contig_View]  LYPD5 [Vega]
ICGC DataPortalENSG00000159871
TCGA cBioPortalLYPD5
AceView (NCBI)LYPD5
Genatlas (Paris)LYPD5
WikiGenes284348
SOURCE (Princeton)LYPD5
Genetics Home Reference (NIH)LYPD5
Genomic and cartography
GoldenPath hg38 (UCSC)LYPD5  -     chr19:43795927-43802461 -  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LYPD5  -     19q13.31   [Description]    (hg19-Feb_2009)
EnsemblLYPD5 - 19q13.31 [CytoView hg19]  LYPD5 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBILYPD5 [Mapview hg19]  LYPD5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055031 AK131520 AK301693 AY358719 BC044237
RefSeq transcript (Entrez)NM_001031749 NM_001288763 NM_182573
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LYPD5
Cluster EST : UnigeneHs.738790 [ NCBI ]
CGAP (NCI)Hs.738790
Alternative Splicing GalleryENSG00000159871
Gene ExpressionLYPD5 [ NCBI-GEO ]   LYPD5 [ EBI - ARRAY_EXPRESS ]   LYPD5 [ SEEK ]   LYPD5 [ MEM ]
Gene Expression Viewer (FireBrowse)LYPD5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284348
GTEX Portal (Tissue expression)LYPD5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UWN5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UWN5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UWN5
Splice isoforms : SwissVarQ6UWN5
PhosPhoSitePlusQ6UWN5
Domaine pattern : Prosite (Expaxy)LY6_UPAR (PS00983)   
Domains : Interpro (EBI)CD59_antigen_CS    LY6_UPA_recep-like   
Domain families : Pfam (Sanger)UPAR_LY6 (PF00021)   
Domain families : Pfam (NCBI)pfam00021   
Conserved Domain (NCBI)LYPD5
DMDM Disease mutations284348
Blocks (Seattle)LYPD5
SuperfamilyQ6UWN5
Human Protein AtlasENSG00000159871
Peptide AtlasQ6UWN5
HPRD08084
IPIIPI00304554   IPI00641332   
Protein Interaction databases
DIP (DOE-UCLA)Q6UWN5
IntAct (EBI)Q6UWN5
FunCoupENSG00000159871
BioGRIDLYPD5
STRING (EMBL)LYPD5
ZODIACLYPD5
Ontologies - Pathways
QuickGOQ6UWN5
Ontology : AmiGOextracellular region  plasma membrane  plasma membrane  C-terminal protein lipidation  cell-matrix adhesion  anchored component of membrane  laminin binding  
Ontology : EGO-EBIextracellular region  plasma membrane  plasma membrane  C-terminal protein lipidation  cell-matrix adhesion  anchored component of membrane  laminin binding  
NDEx NetworkLYPD5
Atlas of Cancer Signalling NetworkLYPD5
Wikipedia pathwaysLYPD5
Orthology - Evolution
OrthoDB284348
GeneTree (enSembl)ENSG00000159871
Phylogenetic Trees/Animal Genes : TreeFamLYPD5
HOVERGENQ6UWN5
HOGENOMQ6UWN5
Homologs : HomoloGeneLYPD5
Homology/Alignments : Family Browser (UCSC)LYPD5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLYPD5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LYPD5
dbVarLYPD5
ClinVarLYPD5
1000_GenomesLYPD5 
Exome Variant ServerLYPD5
ExAC (Exome Aggregation Consortium)LYPD5 (select the gene name)
Genetic variants : HAPMAP284348
Genomic Variants (DGV)LYPD5 [DGVbeta]
DECIPHERLYPD5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLYPD5 
Mutations
ICGC Data PortalLYPD5 
TCGA Data PortalLYPD5 
Broad Tumor PortalLYPD5
OASIS PortalLYPD5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLYPD5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLYPD5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LYPD5
DgiDB (Drug Gene Interaction Database)LYPD5
DoCM (Curated mutations)LYPD5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LYPD5 (select a term)
intoGenLYPD5
Cancer3DLYPD5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLYPD5
Genetic Testing Registry LYPD5
NextProtQ6UWN5 [Medical]
TSGene284348
GENETestsLYPD5
Target ValidationLYPD5
Huge Navigator LYPD5 [HugePedia]
snp3D : Map Gene to Disease284348
BioCentury BCIQLYPD5
ClinGenLYPD5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284348
Chemical/Pharm GKB GenePA142671492
Clinical trialLYPD5
Miscellaneous
canSAR (ICR)LYPD5 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLYPD5
EVEXLYPD5
GoPubMedLYPD5
iHOPLYPD5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:26:45 CEST 2017

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