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LYPD6B (LY6/PLAUR domain containing 6B)

Identity

Alias_symbol (synonym)CT116
LYPD7
Other alias
HGNC (Hugo) LYPD6B
LocusID (NCBI) 130576
Atlas_Id 68721
Location 2q23.2  [Link to chromosome band 2q23]
Location_base_pair Starts at 149118174 and ends at 149215258 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KIF2C (1p34.1) / LYPD6B (2q23.2)NCKAP1 (2q32.1) / LYPD6B (2q23.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LYPD6B   27018
Cards
Entrez_Gene (NCBI)LYPD6B  130576  LY6/PLAUR domain containing 6B
AliasesCT116; LYPD7
GeneCards (Weizmann)LYPD6B
Ensembl hg19 (Hinxton)ENSG00000150556 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000150556 [Gene_View]  chr2:149118174-149215258 [Contig_View]  LYPD6B [Vega]
ICGC DataPortalENSG00000150556
TCGA cBioPortalLYPD6B
AceView (NCBI)LYPD6B
Genatlas (Paris)LYPD6B
WikiGenes130576
SOURCE (Princeton)LYPD6B
Genetics Home Reference (NIH)LYPD6B
Genomic and cartography
GoldenPath hg38 (UCSC)LYPD6B  -     chr2:149118174-149215258 +  2q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LYPD6B  -     2q23.2   [Description]    (hg19-Feb_2009)
EnsemblLYPD6B - 2q23.2 [CytoView hg19]  LYPD6B - 2q23.2 [CytoView hg38]
Mapping of homologs : NCBILYPD6B [Mapview hg19]  LYPD6B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF435957 BC018203 BC040176 BQ056975 CN359800
RefSeq transcript (Entrez)NM_001317002 NM_001317003 NM_001317004 NM_001317005 NM_001317006 NM_177964
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LYPD6B
Cluster EST : UnigeneHs.357567 [ NCBI ]
CGAP (NCI)Hs.357567
Alternative Splicing GalleryENSG00000150556
Gene ExpressionLYPD6B [ NCBI-GEO ]   LYPD6B [ EBI - ARRAY_EXPRESS ]   LYPD6B [ SEEK ]   LYPD6B [ MEM ]
Gene Expression Viewer (FireBrowse)LYPD6B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)130576
GTEX Portal (Tissue expression)LYPD6B
Human Protein AtlasENSG00000150556-LYPD6B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NI32   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NI32  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NI32
Splice isoforms : SwissVarQ8NI32
PhosPhoSitePlusQ8NI32
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LYPD6B
DMDM Disease mutations130576
Blocks (Seattle)LYPD6B
SuperfamilyQ8NI32
Human Protein Atlas [tissue]ENSG00000150556-LYPD6B [tissue]
Peptide AtlasQ8NI32
HPRD14045
IPIIPI00885150   IPI00217542   IPI00935418   IPI00916460   IPI00916578   IPI00916731   
Protein Interaction databases
DIP (DOE-UCLA)Q8NI32
IntAct (EBI)Q8NI32
FunCoupENSG00000150556
BioGRIDLYPD6B
STRING (EMBL)LYPD6B
ZODIACLYPD6B
Ontologies - Pathways
QuickGOQ8NI32
Ontology : AmiGOextracellular region  plasma membrane  C-terminal protein lipidation  anchored component of membrane  
Ontology : EGO-EBIextracellular region  plasma membrane  C-terminal protein lipidation  anchored component of membrane  
NDEx NetworkLYPD6B
Atlas of Cancer Signalling NetworkLYPD6B
Wikipedia pathwaysLYPD6B
Orthology - Evolution
OrthoDB130576
GeneTree (enSembl)ENSG00000150556
Phylogenetic Trees/Animal Genes : TreeFamLYPD6B
HOVERGENQ8NI32
HOGENOMQ8NI32
Homologs : HomoloGeneLYPD6B
Homology/Alignments : Family Browser (UCSC)LYPD6B
Gene fusions - Rearrangements
Tumor Fusion PortalLYPD6B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLYPD6B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LYPD6B
dbVarLYPD6B
ClinVarLYPD6B
1000_GenomesLYPD6B 
Exome Variant ServerLYPD6B
ExAC (Exome Aggregation Consortium)ENSG00000150556
GNOMAD BrowserENSG00000150556
Genetic variants : HAPMAP130576
Genomic Variants (DGV)LYPD6B [DGVbeta]
DECIPHERLYPD6B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLYPD6B 
Mutations
ICGC Data PortalLYPD6B 
TCGA Data PortalLYPD6B 
Broad Tumor PortalLYPD6B
OASIS PortalLYPD6B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLYPD6B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLYPD6B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LYPD6B
DgiDB (Drug Gene Interaction Database)LYPD6B
DoCM (Curated mutations)LYPD6B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LYPD6B (select a term)
intoGenLYPD6B
Cancer3DLYPD6B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLYPD6B
MedgenLYPD6B
Genetic Testing Registry LYPD6B
NextProtQ8NI32 [Medical]
TSGene130576
GENETestsLYPD6B
Target ValidationLYPD6B
Huge Navigator LYPD6B [HugePedia]
snp3D : Map Gene to Disease130576
BioCentury BCIQLYPD6B
ClinGenLYPD6B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD130576
Chemical/Pharm GKB GenePA162394734
Clinical trialLYPD6B
Miscellaneous
canSAR (ICR)LYPD6B (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLYPD6B
EVEXLYPD6B
GoPubMedLYPD6B
iHOPLYPD6B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:05:23 CET 2017

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