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LYPD8 (LY6/PLAUR domain containing 8)

Identity

Other alias-
HGNC (Hugo) LYPD8
LocusID (NCBI) 646627
Atlas_Id 68722
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 248739416 and ends at 248755787 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LYPD8   44208
Cards
Entrez_Gene (NCBI)LYPD8  646627  LY6/PLAUR domain containing 8
Aliases
GeneCards (Weizmann)LYPD8
Ensembl hg19 (Hinxton)ENSG00000259823 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000259823 [Gene_View]  chr1:248739416-248755787 [Contig_View]  LYPD8 [Vega]
ICGC DataPortalENSG00000259823
TCGA cBioPortalLYPD8
AceView (NCBI)LYPD8
Genatlas (Paris)LYPD8
WikiGenes646627
SOURCE (Princeton)LYPD8
Genetics Home Reference (NIH)LYPD8
Genomic and cartography
GoldenPath hg38 (UCSC)LYPD8  -     chr1:248739416-248755787 -  1q44   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LYPD8  -     1q44   [Description]    (hg19-Feb_2009)
EnsemblLYPD8 - 1q44 [CytoView hg19]  LYPD8 - 1q44 [CytoView hg38]
Mapping of homologs : NCBILYPD8 [Mapview hg19]  LYPD8 [Mapview hg38]
OMIM617067   
Gene and transcription
Genbank (Entrez)AY358469 BC033943 BQ027877 CA433021 DA425843
RefSeq transcript (Entrez)NM_001085474 NM_001291283
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LYPD8
Cluster EST : UnigeneHs.632511 [ NCBI ]
CGAP (NCI)Hs.632511
Alternative Splicing GalleryENSG00000259823
Gene ExpressionLYPD8 [ NCBI-GEO ]   LYPD8 [ EBI - ARRAY_EXPRESS ]   LYPD8 [ SEEK ]   LYPD8 [ MEM ]
Gene Expression Viewer (FireBrowse)LYPD8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)646627
GTEX Portal (Tissue expression)LYPD8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UX82   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UX82  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UX82
Splice isoforms : SwissVarQ6UX82
PhosPhoSitePlusQ6UX82
Domains : Interpro (EBI)LY6_UPA_recep-like   
Domain families : Pfam (Sanger)UPAR_LY6 (PF00021)   
Domain families : Pfam (NCBI)pfam00021   
Conserved Domain (NCBI)LYPD8
DMDM Disease mutations646627
Blocks (Seattle)LYPD8
SuperfamilyQ6UX82
Human Protein AtlasENSG00000259823
Peptide AtlasQ6UX82
IPIIPI00432412   IPI00386976   
Protein Interaction databases
DIP (DOE-UCLA)Q6UX82
IntAct (EBI)Q6UX82
FunCoupENSG00000259823
BioGRIDLYPD8
STRING (EMBL)LYPD8
ZODIACLYPD8
Ontologies - Pathways
QuickGOQ6UX82
Ontology : AmiGOextracellular region  extracellular space  plasma membrane  C-terminal protein lipidation  anchored component of membrane  defense response to Gram-negative bacterium  
Ontology : EGO-EBIextracellular region  extracellular space  plasma membrane  C-terminal protein lipidation  anchored component of membrane  defense response to Gram-negative bacterium  
NDEx NetworkLYPD8
Atlas of Cancer Signalling NetworkLYPD8
Wikipedia pathwaysLYPD8
Orthology - Evolution
OrthoDB646627
GeneTree (enSembl)ENSG00000259823
Phylogenetic Trees/Animal Genes : TreeFamLYPD8
HOVERGENQ6UX82
HOGENOMQ6UX82
Homologs : HomoloGeneLYPD8
Homology/Alignments : Family Browser (UCSC)LYPD8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLYPD8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LYPD8
dbVarLYPD8
ClinVarLYPD8
1000_GenomesLYPD8 
Exome Variant ServerLYPD8
ExAC (Exome Aggregation Consortium)LYPD8 (select the gene name)
Genetic variants : HAPMAP646627
Genomic Variants (DGV)LYPD8 [DGVbeta]
DECIPHERLYPD8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLYPD8 
Mutations
ICGC Data PortalLYPD8 
TCGA Data PortalLYPD8 
Broad Tumor PortalLYPD8
OASIS PortalLYPD8 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLYPD8
BioMutasearch LYPD8
DgiDB (Drug Gene Interaction Database)LYPD8
DoCM (Curated mutations)LYPD8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LYPD8 (select a term)
intoGenLYPD8
Cancer3DLYPD8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617067   
Orphanet
MedgenLYPD8
Genetic Testing Registry LYPD8
NextProtQ6UX82 [Medical]
TSGene646627
GENETestsLYPD8
Target ValidationLYPD8
Huge Navigator LYPD8 [HugePedia]
snp3D : Map Gene to Disease646627
BioCentury BCIQLYPD8
ClinGenLYPD8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD646627
Chemical/Pharm GKB GenePA166049119
Clinical trialLYPD8
Miscellaneous
canSAR (ICR)LYPD8 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLYPD8
EVEXLYPD8
GoPubMedLYPD8
iHOPLYPD8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:26:45 CEST 2017

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