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LYRM1 (LYR motif containing 1)

Identity

Alias_symbol (synonym)A211C6.1
Other alias
HGNC (Hugo) LYRM1
LocusID (NCBI) 57149
Atlas_Id 56177
Location 16p12.3  [Link to chromosome band 16p12]
Location_base_pair Starts at 20900666 and ends at 20925011 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LYRM1 (16p12.3) / EP300 (22q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LYRM1   25074
Cards
Entrez_Gene (NCBI)LYRM1  57149  LYR motif containing 1
AliasesA211C6.1
GeneCards (Weizmann)LYRM1
Ensembl hg19 (Hinxton)ENSG00000102897 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102897 [Gene_View]  chr16:20900666-20925011 [Contig_View]  LYRM1 [Vega]
ICGC DataPortalENSG00000102897
TCGA cBioPortalLYRM1
AceView (NCBI)LYRM1
Genatlas (Paris)LYRM1
WikiGenes57149
SOURCE (Princeton)LYRM1
Genetics Home Reference (NIH)LYRM1
Genomic and cartography
GoldenPath hg38 (UCSC)LYRM1  -     chr16:20900666-20925011 +  16p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LYRM1  -     16p12.3   [Description]    (hg19-Feb_2009)
EnsemblLYRM1 - 16p12.3 [CytoView hg19]  LYRM1 - 16p12.3 [CytoView hg38]
Mapping of homologs : NCBILYRM1 [Mapview hg19]  LYRM1 [Mapview hg38]
OMIM614709   
Gene and transcription
Genbank (Entrez)AK308690 AK310055 AK311321 AK311415 AK311881
RefSeq transcript (Entrez)NM_001128301 NM_001128302 NM_001302835 NM_001302836 NM_020424
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LYRM1
Cluster EST : UnigeneHs.745012 [ NCBI ]
CGAP (NCI)Hs.745012
Alternative Splicing GalleryENSG00000102897
Gene ExpressionLYRM1 [ NCBI-GEO ]   LYRM1 [ EBI - ARRAY_EXPRESS ]   LYRM1 [ SEEK ]   LYRM1 [ MEM ]
Gene Expression Viewer (FireBrowse)LYRM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57149
GTEX Portal (Tissue expression)LYRM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43325   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43325  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43325
Splice isoforms : SwissVarO43325
PhosPhoSitePlusO43325
Domains : Interpro (EBI)Complex1_LYR   
Domain families : Pfam (Sanger)Complex1_LYR (PF05347)   
Domain families : Pfam (NCBI)pfam05347   
Conserved Domain (NCBI)LYRM1
DMDM Disease mutations57149
Blocks (Seattle)LYRM1
SuperfamilyO43325
Human Protein AtlasENSG00000102897
Peptide AtlasO43325
HPRD14254
IPIIPI00011979   
Protein Interaction databases
DIP (DOE-UCLA)O43325
IntAct (EBI)O43325
FunCoupENSG00000102897
BioGRIDLYRM1
STRING (EMBL)LYRM1
ZODIACLYRM1
Ontologies - Pathways
QuickGOO43325
Ontology : AmiGOnucleoplasm  mitochondrion  midbody  
Ontology : EGO-EBInucleoplasm  mitochondrion  midbody  
NDEx NetworkLYRM1
Atlas of Cancer Signalling NetworkLYRM1
Wikipedia pathwaysLYRM1
Orthology - Evolution
OrthoDB57149
GeneTree (enSembl)ENSG00000102897
Phylogenetic Trees/Animal Genes : TreeFamLYRM1
HOVERGENO43325
HOGENOMO43325
Homologs : HomoloGeneLYRM1
Homology/Alignments : Family Browser (UCSC)LYRM1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLYRM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LYRM1
dbVarLYRM1
ClinVarLYRM1
1000_GenomesLYRM1 
Exome Variant ServerLYRM1
ExAC (Exome Aggregation Consortium)LYRM1 (select the gene name)
Genetic variants : HAPMAP57149
Genomic Variants (DGV)LYRM1 [DGVbeta]
DECIPHERLYRM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLYRM1 
Mutations
ICGC Data PortalLYRM1 
TCGA Data PortalLYRM1 
Broad Tumor PortalLYRM1
OASIS PortalLYRM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLYRM1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLYRM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch LYRM1
DgiDB (Drug Gene Interaction Database)LYRM1
DoCM (Curated mutations)LYRM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LYRM1 (select a term)
intoGenLYRM1
Cancer3DLYRM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614709   
Orphanet
MedgenLYRM1
Genetic Testing Registry LYRM1
NextProtO43325 [Medical]
TSGene57149
GENETestsLYRM1
Target ValidationLYRM1
Huge Navigator LYRM1 [HugePedia]
snp3D : Map Gene to Disease57149
BioCentury BCIQLYRM1
ClinGenLYRM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57149
Chemical/Pharm GKB GenePA162394735
Clinical trialLYRM1
Miscellaneous
canSAR (ICR)LYRM1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLYRM1
EVEXLYRM1
GoPubMedLYRM1
iHOPLYRM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:16:46 CEST 2017

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