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LYRM2 (LYR motif containing 2)

Identity

Alias_symbol (synonym)DJ122O8.2
Other alias
HGNC (Hugo) LYRM2
LocusID (NCBI) 57226
Atlas_Id 68727
Location 6q15  [Link to chromosome band 6q15]
Location_base_pair Starts at 89632224 and ends at 89638755 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GLRX3 (10q26.3) / LYRM2 (6q15)LYRM2 (6q15) / FAM234B (12p13.1)ZC3H11A (1q32.1) / LYRM2 (6q15)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LYRM2   25229
Cards
Entrez_Gene (NCBI)LYRM2  57226  LYR motif containing 2
AliasesDJ122O8.2
GeneCards (Weizmann)LYRM2
Ensembl hg19 (Hinxton)ENSG00000083099 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000083099 [Gene_View]  ENSG00000083099 [Sequence]  chr6:89632224-89638755 [Contig_View]  LYRM2 [Vega]
ICGC DataPortalENSG00000083099
TCGA cBioPortalLYRM2
AceView (NCBI)LYRM2
Genatlas (Paris)LYRM2
WikiGenes57226
SOURCE (Princeton)LYRM2
Genetics Home Reference (NIH)LYRM2
Genomic and cartography
GoldenPath hg38 (UCSC)LYRM2  -     chr6:89632224-89638755 -  6q15   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LYRM2  -     6q15   [Description]    (hg19-Feb_2009)
EnsemblLYRM2 - 6q15 [CytoView hg19]  LYRM2 - 6q15 [CytoView hg38]
Mapping of homologs : NCBILYRM2 [Mapview hg19]  LYRM2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024783 AK094994 AK311151 AK311180 AK311275
RefSeq transcript (Entrez)NM_020466
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LYRM2
Cluster EST : UnigeneHs.177275 [ NCBI ]
CGAP (NCI)Hs.177275
Alternative Splicing GalleryENSG00000083099
Gene ExpressionLYRM2 [ NCBI-GEO ]   LYRM2 [ EBI - ARRAY_EXPRESS ]   LYRM2 [ SEEK ]   LYRM2 [ MEM ]
Gene Expression Viewer (FireBrowse)LYRM2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57226
GTEX Portal (Tissue expression)LYRM2
Human Protein AtlasENSG00000083099-LYRM2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NU23   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NU23  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NU23
Splice isoforms : SwissVarQ9NU23
PhosPhoSitePlusQ9NU23
Domains : Interpro (EBI)Complex1_LYR    Lyrm2   
Domain families : Pfam (Sanger)Complex1_LYR (PF05347)   
Domain families : Pfam (NCBI)pfam05347   
Conserved Domain (NCBI)LYRM2
DMDM Disease mutations57226
Blocks (Seattle)LYRM2
SuperfamilyQ9NU23
Human Protein Atlas [tissue]ENSG00000083099-LYRM2 [tissue]
Peptide AtlasQ9NU23
HPRD13146
IPIIPI00007148   IPI00983885   IPI00974437   IPI00977952   
Protein Interaction databases
DIP (DOE-UCLA)Q9NU23
IntAct (EBI)Q9NU23
FunCoupENSG00000083099
BioGRIDLYRM2
STRING (EMBL)LYRM2
ZODIACLYRM2
Ontologies - Pathways
QuickGOQ9NU23
Ontology : AmiGOprotein binding  mitochondrion  
Ontology : EGO-EBIprotein binding  mitochondrion  
NDEx NetworkLYRM2
Atlas of Cancer Signalling NetworkLYRM2
Wikipedia pathwaysLYRM2
Orthology - Evolution
OrthoDB57226
GeneTree (enSembl)ENSG00000083099
Phylogenetic Trees/Animal Genes : TreeFamLYRM2
HOVERGENQ9NU23
HOGENOMQ9NU23
Homologs : HomoloGeneLYRM2
Homology/Alignments : Family Browser (UCSC)LYRM2
Gene fusions - Rearrangements
Fusion : QuiverLYRM2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLYRM2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LYRM2
dbVarLYRM2
ClinVarLYRM2
1000_GenomesLYRM2 
Exome Variant ServerLYRM2
ExAC (Exome Aggregation Consortium)ENSG00000083099
GNOMAD BrowserENSG00000083099
Varsome BrowserLYRM2
Genetic variants : HAPMAP57226
Genomic Variants (DGV)LYRM2 [DGVbeta]
DECIPHERLYRM2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLYRM2 
Mutations
ICGC Data PortalLYRM2 
TCGA Data PortalLYRM2 
Broad Tumor PortalLYRM2
OASIS PortalLYRM2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLYRM2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLYRM2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch LYRM2
DgiDB (Drug Gene Interaction Database)LYRM2
DoCM (Curated mutations)LYRM2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LYRM2 (select a term)
intoGenLYRM2
Cancer3DLYRM2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLYRM2
MedgenLYRM2
Genetic Testing Registry LYRM2
NextProtQ9NU23 [Medical]
TSGene57226
GENETestsLYRM2
Target ValidationLYRM2
Huge Navigator LYRM2 [HugePedia]
snp3D : Map Gene to Disease57226
BioCentury BCIQLYRM2
ClinGenLYRM2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57226
Chemical/Pharm GKB GenePA162394751
Clinical trialLYRM2
Miscellaneous
canSAR (ICR)LYRM2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLYRM2
EVEXLYRM2
GoPubMedLYRM2
iHOPLYRM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:12:05 CEST 2018

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