Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LYRM4-AS1 (LYRM4 antisense RNA 1)

Identity

Other alias-
HGNC (Hugo) LYRM4-AS1
LocusID (NCBI) 100129461
Atlas_Id 77915
Location 6p25.1  [Link to chromosome band 6p25]
Location_base_pair Starts at 5003816 and ends at 5240496 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LYRM4-AS1   52055
Cards
Entrez_Gene (NCBI)LYRM4-AS1  100129461  LYRM4 antisense RNA 1
Aliases
GeneCards (Weizmann)LYRM4-AS1
Ensembl hg19 (Hinxton)ENSG00000272142 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000272142 [Gene_View]  ENSG00000272142 [Sequence]  chr6:5003816-5240496 [Contig_View]  LYRM4-AS1 [Vega]
ICGC DataPortalENSG00000272142
TCGA cBioPortalLYRM4-AS1
AceView (NCBI)LYRM4-AS1
Genatlas (Paris)LYRM4-AS1
WikiGenes100129461
SOURCE (Princeton)LYRM4-AS1
Genetics Home Reference (NIH)LYRM4-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)LYRM4-AS1  -     chr6:5003816-5240496 +  6p25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LYRM4-AS1  -     6p25.1   [Description]    (hg19-Feb_2009)
EnsemblLYRM4-AS1 - 6p25.1 [CytoView hg19]  LYRM4-AS1 - 6p25.1 [CytoView hg38]
Mapping of homologs : NCBILYRM4-AS1 [Mapview hg19]  LYRM4-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094934 BC042032 BC133670 BE788607 CR736828
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LYRM4-AS1
Cluster EST : UnigeneHs.630239 [ NCBI ]
CGAP (NCI)Hs.630239
Alternative Splicing GalleryENSG00000272142
Gene ExpressionLYRM4-AS1 [ NCBI-GEO ]   LYRM4-AS1 [ EBI - ARRAY_EXPRESS ]   LYRM4-AS1 [ SEEK ]   LYRM4-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)LYRM4-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100129461
GTEX Portal (Tissue expression)LYRM4-AS1
Human Protein AtlasENSG00000272142-LYRM4-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LYRM4-AS1
DMDM Disease mutations100129461
Blocks (Seattle)LYRM4-AS1
Human Protein Atlas [tissue]ENSG00000272142-LYRM4-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000272142
BioGRIDLYRM4-AS1
STRING (EMBL)LYRM4-AS1
ZODIACLYRM4-AS1
Ontologies - Pathways
Huge Navigator LYRM4-AS1 [HugePedia]
snp3D : Map Gene to Disease100129461
BioCentury BCIQLYRM4-AS1
ClinGenLYRM4-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100129461
Clinical trialLYRM4-AS1
Miscellaneous
canSAR (ICR)LYRM4-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLYRM4-AS1
EVEXLYRM4-AS1
GoPubMedLYRM4-AS1
iHOPLYRM4-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:12:05 CEST 2018

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