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LYRM5 (LYR motif containing 5)

Identity

Other alias-
HGNC (Hugo) LYRM5
LocusID (NCBI) 144363
Atlas_Id 68729
Location 12p12.1  [Link to chromosome band 12p12]
Location_base_pair Starts at 25348150 and ends at 25357949 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CCDC91 (12p11.22) / LYRM5 (12p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LYRM5   27052
Cards
Entrez_Gene (NCBI)LYRM5  144363  LYR motif containing 5
Aliases
GeneCards (Weizmann)LYRM5
Ensembl hg19 (Hinxton)ENSG00000205707 [Gene_View]  chr12:25348150-25357949 [Contig_View]  LYRM5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000205707 [Gene_View]  chr12:25348150-25357949 [Contig_View]  LYRM5 [Vega]
ICGC DataPortalENSG00000205707
TCGA cBioPortalLYRM5
AceView (NCBI)LYRM5
Genatlas (Paris)LYRM5
WikiGenes144363
SOURCE (Princeton)LYRM5
Genetics Home Reference (NIH)LYRM5
Genomic and cartography
GoldenPath hg19 (UCSC)LYRM5  -     chr12:25348150-25357949 +  12p12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LYRM5  -     12p12.1   [Description]    (hg38-Dec_2013)
EnsemblLYRM5 - 12p12.1 [CytoView hg19]  LYRM5 - 12p12.1 [CytoView hg38]
Mapping of homologs : NCBILYRM5 [Mapview hg19]  LYRM5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057730 AK095164 BC071769 BC100276 BG771497
RefSeq transcript (Entrez)NM_001001660
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_009714 NW_004929383
Consensus coding sequences : CCDS (NCBI)LYRM5
Cluster EST : UnigeneHs.209151 [ NCBI ]
CGAP (NCI)Hs.209151
Alternative Splicing GalleryENSG00000205707
Gene ExpressionLYRM5 [ NCBI-GEO ]   LYRM5 [ EBI - ARRAY_EXPRESS ]   LYRM5 [ SEEK ]   LYRM5 [ MEM ]
Gene Expression Viewer (FireBrowse)LYRM5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)144363
GTEX Portal (Tissue expression)LYRM5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IPR1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IPR1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IPR1
Splice isoforms : SwissVarQ6IPR1
PhosPhoSitePlusQ6IPR1
Domains : Interpro (EBI)Complex1_LYR   
Domain families : Pfam (Sanger)Complex1_LYR (PF05347)   
Domain families : Pfam (NCBI)pfam05347   
Conserved Domain (NCBI)LYRM5
DMDM Disease mutations144363
Blocks (Seattle)LYRM5
SuperfamilyQ6IPR1
Human Protein AtlasENSG00000205707
Peptide AtlasQ6IPR1
HPRD14067
IPIIPI01026476   IPI01025743   IPI01025019   IPI01026251   IPI01026186   IPI00760602   
Protein Interaction databases
DIP (DOE-UCLA)Q6IPR1
IntAct (EBI)Q6IPR1
FunCoupENSG00000205707
BioGRIDLYRM5
STRING (EMBL)LYRM5
ZODIACLYRM5
Ontologies - Pathways
QuickGOQ6IPR1
Ontology : AmiGOmitochondrion  
Ontology : EGO-EBImitochondrion  
NDEx NetworkLYRM5
Atlas of Cancer Signalling NetworkLYRM5
Wikipedia pathwaysLYRM5
Orthology - Evolution
OrthoDB144363
GeneTree (enSembl)ENSG00000205707
Phylogenetic Trees/Animal Genes : TreeFamLYRM5
HOVERGENQ6IPR1
HOGENOMQ6IPR1
Homologs : HomoloGeneLYRM5
Homology/Alignments : Family Browser (UCSC)LYRM5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLYRM5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LYRM5
dbVarLYRM5
ClinVarLYRM5
1000_GenomesLYRM5 
Exome Variant ServerLYRM5
ExAC (Exome Aggregation Consortium)LYRM5 (select the gene name)
Genetic variants : HAPMAP144363
Genomic Variants (DGV)LYRM5 [DGVbeta]
DECIPHER (Syndromes)12:25348150-25357949  ENSG00000205707
CONAN: Copy Number AnalysisLYRM5 
Mutations
ICGC Data PortalLYRM5 
TCGA Data PortalLYRM5 
Broad Tumor PortalLYRM5
OASIS PortalLYRM5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLYRM5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLYRM5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch LYRM5
DgiDB (Drug Gene Interaction Database)LYRM5
DoCM (Curated mutations)LYRM5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LYRM5 (select a term)
intoGenLYRM5
Cancer3DLYRM5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLYRM5
Genetic Testing Registry LYRM5
NextProtQ6IPR1 [Medical]
TSGene144363
GENETestsLYRM5
Huge Navigator LYRM5 [HugePedia]
snp3D : Map Gene to Disease144363
BioCentury BCIQLYRM5
ClinGenLYRM5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD144363
Chemical/Pharm GKB GenePA162394773
Clinical trialLYRM5
Miscellaneous
canSAR (ICR)LYRM5 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLYRM5
EVEXLYRM5
GoPubMedLYRM5
iHOPLYRM5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:27:27 CET 2017

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