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LYRM7 (LYR motif containing 7)

Identity

Alias_namesC5orf31
chromosome 5 open reading frame 31
Lyrm7 homolog (mouse)
Alias_symbol (synonym)FLJ20796
MZM1L
Other aliasMC3DN8
HGNC (Hugo) LYRM7
LocusID (NCBI) 90624
Atlas_Id 68730
Location 5q23.3  [Link to chromosome band 5q23]
Location_base_pair Starts at 130506607 and ends at 130541119 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LYRM7   28072
Cards
Entrez_Gene (NCBI)LYRM7  90624  LYR motif containing 7
AliasesC5orf31; MC3DN8; MZM1L
GeneCards (Weizmann)LYRM7
Ensembl hg19 (Hinxton)ENSG00000186687 [Gene_View]  chr5:130506607-130541119 [Contig_View]  LYRM7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186687 [Gene_View]  chr5:130506607-130541119 [Contig_View]  LYRM7 [Vega]
ICGC DataPortalENSG00000186687
TCGA cBioPortalLYRM7
AceView (NCBI)LYRM7
Genatlas (Paris)LYRM7
WikiGenes90624
SOURCE (Princeton)LYRM7
Genetics Home Reference (NIH)LYRM7
Genomic and cartography
GoldenPath hg19 (UCSC)LYRM7  -     chr5:130506607-130541119 +  5q23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LYRM7  -     5q23.3   [Description]    (hg38-Dec_2013)
EnsemblLYRM7 - 5q23.3 [CytoView hg19]  LYRM7 - 5q23.3 [CytoView hg38]
Mapping of homologs : NCBILYRM7 [Mapview hg19]  LYRM7 [Mapview hg38]
OMIM615831   615838   
Gene and transcription
Genbank (Entrez)AK000803 AK056991 BC022429 BC037930 BC047079
RefSeq transcript (Entrez)NM_001293735 NM_181705
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_034163 NT_034772 NW_004929323
Consensus coding sequences : CCDS (NCBI)LYRM7
Cluster EST : UnigeneHs.115467 [ NCBI ]
CGAP (NCI)Hs.115467
Alternative Splicing GalleryENSG00000186687
Gene ExpressionLYRM7 [ NCBI-GEO ]   LYRM7 [ EBI - ARRAY_EXPRESS ]   LYRM7 [ SEEK ]   LYRM7 [ MEM ]
Gene Expression Viewer (FireBrowse)LYRM7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90624
GTEX Portal (Tissue expression)LYRM7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5U5X0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5U5X0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5U5X0
Splice isoforms : SwissVarQ5U5X0
PhosPhoSitePlusQ5U5X0
Domains : Interpro (EBI)Complex1_LYR   
Domain families : Pfam (Sanger)Complex1_LYR (PF05347)   
Domain families : Pfam (NCBI)pfam05347   
Conserved Domain (NCBI)LYRM7
DMDM Disease mutations90624
Blocks (Seattle)LYRM7
SuperfamilyQ5U5X0
Human Protein AtlasENSG00000186687
Peptide AtlasQ5U5X0
HPRD14276
IPIIPI00329321   IPI00967499   IPI00964230   
Protein Interaction databases
DIP (DOE-UCLA)Q5U5X0
IntAct (EBI)Q5U5X0
FunCoupENSG00000186687
BioGRIDLYRM7
STRING (EMBL)LYRM7
ZODIACLYRM7
Ontologies - Pathways
QuickGOQ5U5X0
Ontology : AmiGOmitochondrial matrix  
Ontology : EGO-EBImitochondrial matrix  
NDEx NetworkLYRM7
Atlas of Cancer Signalling NetworkLYRM7
Wikipedia pathwaysLYRM7
Orthology - Evolution
OrthoDB90624
GeneTree (enSembl)ENSG00000186687
Phylogenetic Trees/Animal Genes : TreeFamLYRM7
HOVERGENQ5U5X0
HOGENOMQ5U5X0
Homologs : HomoloGeneLYRM7
Homology/Alignments : Family Browser (UCSC)LYRM7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLYRM7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LYRM7
dbVarLYRM7
ClinVarLYRM7
1000_GenomesLYRM7 
Exome Variant ServerLYRM7
ExAC (Exome Aggregation Consortium)LYRM7 (select the gene name)
Genetic variants : HAPMAP90624
Genomic Variants (DGV)LYRM7 [DGVbeta]
DECIPHER (Syndromes)5:130506607-130541119  ENSG00000186687
CONAN: Copy Number AnalysisLYRM7 
Mutations
ICGC Data PortalLYRM7 
TCGA Data PortalLYRM7 
Broad Tumor PortalLYRM7
OASIS PortalLYRM7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLYRM7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLYRM7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch LYRM7
DgiDB (Drug Gene Interaction Database)LYRM7
DoCM (Curated mutations)LYRM7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LYRM7 (select a term)
intoGenLYRM7
Cancer3DLYRM7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615831    615838   
Orphanet3378   
MedgenLYRM7
Genetic Testing Registry LYRM7
NextProtQ5U5X0 [Medical]
TSGene90624
GENETestsLYRM7
Huge Navigator LYRM7 [HugePedia]
snp3D : Map Gene to Disease90624
BioCentury BCIQLYRM7
ClinGenLYRM7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90624
Chemical/Pharm GKB GenePA162394784
Clinical trialLYRM7
Miscellaneous
canSAR (ICR)LYRM7 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLYRM7
EVEXLYRM7
GoPubMedLYRM7
iHOPLYRM7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:27:27 CET 2017

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