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LYRM9 (LYR motif containing 9)

Identity

Alias_namesC17orf108
chromosome 17 open reading frame 108
Alias_symbol (synonym)HSD24
Other alias
HGNC (Hugo) LYRM9
LocusID (NCBI) 201229
Atlas_Id 68731
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 27878314 and ends at 27893383 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LYRM9   27314
Cards
Entrez_Gene (NCBI)LYRM9  201229  LYR motif containing 9
AliasesC17orf108; HSD24
GeneCards (Weizmann)LYRM9
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:27878314-27893383 [Contig_View]  LYRM9 [Vega]
TCGA cBioPortalLYRM9
AceView (NCBI)LYRM9
Genatlas (Paris)LYRM9
WikiGenes201229
SOURCE (Princeton)LYRM9
Genetics Home Reference (NIH)LYRM9
Genomic and cartography
GoldenPath hg38 (UCSC)LYRM9  -     chr17:27878314-27893383 -  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LYRM9  -     17q11.2   [Description]    (hg19-Feb_2009)
EnsemblLYRM9 - 17q11.2 [CytoView hg19]  LYRM9 - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBILYRM9 [Mapview hg19]  LYRM9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI804732 AK055808 AY251535 BC018092 DB474433
RefSeq transcript (Entrez)NM_001076680
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LYRM9
Cluster EST : UnigeneHs.687951 [ NCBI ]
CGAP (NCI)Hs.687951
Gene ExpressionLYRM9 [ NCBI-GEO ]   LYRM9 [ EBI - ARRAY_EXPRESS ]   LYRM9 [ SEEK ]   LYRM9 [ MEM ]
Gene Expression Viewer (FireBrowse)LYRM9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)201229
GTEX Portal (Tissue expression)LYRM9
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MSI8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MSI8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MSI8
Splice isoforms : SwissVarA8MSI8
PhosPhoSitePlusA8MSI8
Domains : Interpro (EBI)Complex1_LYR   
Domain families : Pfam (Sanger)Complex1_LYR (PF05347)   
Domain families : Pfam (NCBI)pfam05347   
Conserved Domain (NCBI)LYRM9
DMDM Disease mutations201229
Blocks (Seattle)LYRM9
SuperfamilyA8MSI8
Peptide AtlasA8MSI8
IPIIPI00401940   IPI00790227   IPI00965702   IPI00965419   
Protein Interaction databases
DIP (DOE-UCLA)A8MSI8
IntAct (EBI)A8MSI8
BioGRIDLYRM9
STRING (EMBL)LYRM9
ZODIACLYRM9
Ontologies - Pathways
QuickGOA8MSI8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLYRM9
Atlas of Cancer Signalling NetworkLYRM9
Wikipedia pathwaysLYRM9
Orthology - Evolution
OrthoDB201229
Phylogenetic Trees/Animal Genes : TreeFamLYRM9
HOVERGENA8MSI8
HOGENOMA8MSI8
Homologs : HomoloGeneLYRM9
Homology/Alignments : Family Browser (UCSC)LYRM9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLYRM9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LYRM9
dbVarLYRM9
ClinVarLYRM9
1000_GenomesLYRM9 
Exome Variant ServerLYRM9
ExAC (Exome Aggregation Consortium)LYRM9 (select the gene name)
Genetic variants : HAPMAP201229
Genomic Variants (DGV)LYRM9 [DGVbeta]
DECIPHERLYRM9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLYRM9 
Mutations
ICGC Data PortalLYRM9 
TCGA Data PortalLYRM9 
Broad Tumor PortalLYRM9
OASIS PortalLYRM9 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLYRM9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LYRM9
DgiDB (Drug Gene Interaction Database)LYRM9
DoCM (Curated mutations)LYRM9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LYRM9 (select a term)
intoGenLYRM9
Cancer3DLYRM9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLYRM9
Genetic Testing Registry LYRM9
NextProtA8MSI8 [Medical]
TSGene201229
GENETestsLYRM9
Target ValidationLYRM9
Huge Navigator LYRM9 [HugePedia]
snp3D : Map Gene to Disease201229
BioCentury BCIQLYRM9
ClinGenLYRM9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD201229
Chemical/Pharm GKB GenePA165431642
Clinical trialLYRM9
Miscellaneous
canSAR (ICR)LYRM9 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLYRM9
EVEXLYRM9
GoPubMedLYRM9
iHOPLYRM9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:25:17 CEST 2017

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