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LYSMD2 (LysM domain containing 2)

Identity

Alias_namesLysM, putative peptidoglycan-binding, domain containing 2
Alias_symbol (synonym)MGC35274
Other alias-
HGNC (Hugo) LYSMD2
LocusID (NCBI) 256586
Atlas_Id 68733
Location 15q21.2  [Link to chromosome band 15q21]
Location_base_pair Starts at 51723064 and ends at 51751453 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LYSMD2 (15q21.2) / SLC24A5 (15q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LYSMD2   28571
Cards
Entrez_Gene (NCBI)LYSMD2  256586  LysM domain containing 2
Aliases
GeneCards (Weizmann)LYSMD2
Ensembl hg19 (Hinxton)ENSG00000140280 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140280 [Gene_View]  chr15:51723064-51751453 [Contig_View]  LYSMD2 [Vega]
ICGC DataPortalENSG00000140280
TCGA cBioPortalLYSMD2
AceView (NCBI)LYSMD2
Genatlas (Paris)LYSMD2
WikiGenes256586
SOURCE (Princeton)LYSMD2
Genetics Home Reference (NIH)LYSMD2
Genomic and cartography
GoldenPath hg38 (UCSC)LYSMD2  -     chr15:51723064-51751453 -  15q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LYSMD2  -     15q21.2   [Description]    (hg19-Feb_2009)
EnsemblLYSMD2 - 15q21.2 [CytoView hg19]  LYSMD2 - 15q21.2 [CytoView hg38]
Mapping of homologs : NCBILYSMD2 [Mapview hg19]  LYSMD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK129759 AY125955 BC022075 BC033515 BI822634
RefSeq transcript (Entrez)NM_001143917 NM_153374
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LYSMD2
Cluster EST : UnigeneHs.603629 [ NCBI ]
CGAP (NCI)Hs.603629
Alternative Splicing GalleryENSG00000140280
Gene ExpressionLYSMD2 [ NCBI-GEO ]   LYSMD2 [ EBI - ARRAY_EXPRESS ]   LYSMD2 [ SEEK ]   LYSMD2 [ MEM ]
Gene Expression Viewer (FireBrowse)LYSMD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)256586
GTEX Portal (Tissue expression)LYSMD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IV50   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IV50  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IV50
Splice isoforms : SwissVarQ8IV50
PhosPhoSitePlusQ8IV50
Domaine pattern : Prosite (Expaxy)LYSM (PS51782)   
Domains : Interpro (EBI)LysM_dom   
Domain families : Pfam (Sanger)LysM (PF01476)   
Domain families : Pfam (NCBI)pfam01476   
Domain families : Smart (EMBL)LysM (SM00257)  
Conserved Domain (NCBI)LYSMD2
DMDM Disease mutations256586
Blocks (Seattle)LYSMD2
SuperfamilyQ8IV50
Human Protein AtlasENSG00000140280
Peptide AtlasQ8IV50
HPRD17531
IPIIPI00216874   IPI00784740   
Protein Interaction databases
DIP (DOE-UCLA)Q8IV50
IntAct (EBI)Q8IV50
FunCoupENSG00000140280
BioGRIDLYSMD2
STRING (EMBL)LYSMD2
ZODIACLYSMD2
Ontologies - Pathways
QuickGOQ8IV50
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLYSMD2
Atlas of Cancer Signalling NetworkLYSMD2
Wikipedia pathwaysLYSMD2
Orthology - Evolution
OrthoDB256586
GeneTree (enSembl)ENSG00000140280
Phylogenetic Trees/Animal Genes : TreeFamLYSMD2
HOVERGENQ8IV50
HOGENOMQ8IV50
Homologs : HomoloGeneLYSMD2
Homology/Alignments : Family Browser (UCSC)LYSMD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLYSMD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LYSMD2
dbVarLYSMD2
ClinVarLYSMD2
1000_GenomesLYSMD2 
Exome Variant ServerLYSMD2
ExAC (Exome Aggregation Consortium)LYSMD2 (select the gene name)
Genetic variants : HAPMAP256586
Genomic Variants (DGV)LYSMD2 [DGVbeta]
DECIPHERLYSMD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLYSMD2 
Mutations
ICGC Data PortalLYSMD2 
TCGA Data PortalLYSMD2 
Broad Tumor PortalLYSMD2
OASIS PortalLYSMD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLYSMD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLYSMD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LYSMD2
DgiDB (Drug Gene Interaction Database)LYSMD2
DoCM (Curated mutations)LYSMD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LYSMD2 (select a term)
intoGenLYSMD2
Cancer3DLYSMD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLYSMD2
Genetic Testing Registry LYSMD2
NextProtQ8IV50 [Medical]
TSGene256586
GENETestsLYSMD2
Target ValidationLYSMD2
Huge Navigator LYSMD2 [HugePedia]
snp3D : Map Gene to Disease256586
BioCentury BCIQLYSMD2
ClinGenLYSMD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD256586
Chemical/Pharm GKB GenePA142671494
Clinical trialLYSMD2
Miscellaneous
canSAR (ICR)LYSMD2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLYSMD2
EVEXLYSMD2
GoPubMedLYSMD2
iHOPLYSMD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:26:47 CEST 2017

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