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LYSMD3 (LysM domain containing 3)

Identity

Alias (NCBI)-
HGNC (Hugo) LYSMD3
HGNC Alias symbFLJ13542
HGNC Previous nameLysM, putative peptidoglycan-binding, domain containing 3
LocusID (NCBI) 116068
Atlas_Id 68734
Location 5q14.3  [Link to chromosome band 5q14]
Location_base_pair Starts at 90515626 and ends at 90529584 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)LYSMD3   26969
Cards
Entrez_Gene (NCBI)LYSMD3    LysM domain containing 3
Aliases
GeneCards (Weizmann)LYSMD3
Ensembl hg19 (Hinxton)ENSG00000176018 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176018 [Gene_View]  ENSG00000176018 [Sequence]  chr5:90515626-90529584 [Contig_View]  LYSMD3 [Vega]
ICGC DataPortalENSG00000176018
TCGA cBioPortalLYSMD3
AceView (NCBI)LYSMD3
Genatlas (Paris)LYSMD3
SOURCE (Princeton)LYSMD3
Genetics Home Reference (NIH)LYSMD3
Genomic and cartography
GoldenPath hg38 (UCSC)LYSMD3  -     chr5:90515626-90529584 -  5q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LYSMD3  -     5q14.3   [Description]    (hg19-Feb_2009)
GoldenPathLYSMD3 - 5q14.3 [CytoView hg19]  LYSMD3 - 5q14.3 [CytoView hg38]
ImmunoBaseENSG00000176018
Genome Data Viewer NCBILYSMD3 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK023604 AK291478 AL137315 AL832721 BC058027
RefSeq transcript (Entrez)NM_001286812 NM_198273
Consensus coding sequences : CCDS (NCBI)LYSMD3
Gene ExpressionLYSMD3 [ NCBI-GEO ]   LYSMD3 [ EBI - ARRAY_EXPRESS ]   LYSMD3 [ SEEK ]   LYSMD3 [ MEM ]
Gene Expression Viewer (FireBrowse)LYSMD3 [ Firebrowse - Broad ]
GenevisibleExpression of LYSMD3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116068
GTEX Portal (Tissue expression)LYSMD3
Human Protein AtlasENSG00000176018-LYSMD3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z3D4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z3D4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z3D4
PhosPhoSitePlusQ7Z3D4
Domaine pattern : Prosite (Expaxy)LYSM (PS51782)   
Domains : Interpro (EBI)LysM_dom    LysM_dom_sf   
Domain families : Pfam (Sanger)LysM (PF01476)   
Domain families : Pfam (NCBI)pfam01476   
Domain families : Smart (EMBL)LysM (SM00257)  
Conserved Domain (NCBI)LYSMD3
SuperfamilyQ7Z3D4
AlphaFold pdb e-kbQ7Z3D4   
Human Protein Atlas [tissue]ENSG00000176018-LYSMD3 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q7Z3D4
IntAct (EBI)Q7Z3D4
BioGRIDLYSMD3
STRING (EMBL)LYSMD3
ZODIACLYSMD3
Ontologies - Pathways
QuickGOQ7Z3D4
Ontology : AmiGOGolgi apparatus  Golgi apparatus  plasma membrane  Golgi organization  Golgi organization  integral component of membrane  
Ontology : EGO-EBIGolgi apparatus  Golgi apparatus  plasma membrane  Golgi organization  Golgi organization  integral component of membrane  
NDEx NetworkLYSMD3
Atlas of Cancer Signalling NetworkLYSMD3
Wikipedia pathwaysLYSMD3
Orthology - Evolution
OrthoDB116068
GeneTree (enSembl)ENSG00000176018
Phylogenetic Trees/Animal Genes : TreeFamLYSMD3
Homologs : HomoloGeneLYSMD3
Homology/Alignments : Family Browser (UCSC)LYSMD3
Gene fusions - Rearrangements
Fusion : QuiverLYSMD3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLYSMD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LYSMD3
dbVarLYSMD3
ClinVarLYSMD3
MonarchLYSMD3
1000_GenomesLYSMD3 
Exome Variant ServerLYSMD3
GNOMAD BrowserENSG00000176018
Varsome BrowserLYSMD3
ACMGLYSMD3 variants
VarityQ7Z3D4
Genomic Variants (DGV)LYSMD3 [DGVbeta]
DECIPHERLYSMD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLYSMD3 
Mutations
ICGC Data PortalLYSMD3 
TCGA Data PortalLYSMD3 
Broad Tumor PortalLYSMD3
OASIS PortalLYSMD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLYSMD3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DLYSMD3
Mutations and Diseases : HGMDLYSMD3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaLYSMD3
DgiDB (Drug Gene Interaction Database)LYSMD3
DoCM (Curated mutations)LYSMD3
CIViC (Clinical Interpretations of Variants in Cancer)LYSMD3
Cancer3DLYSMD3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLYSMD3
MedgenLYSMD3
Genetic Testing Registry LYSMD3
NextProtQ7Z3D4 [Medical]
GENETestsLYSMD3
Target ValidationLYSMD3
Huge Navigator LYSMD3 [HugePedia]
ClinGenLYSMD3
Clinical trials, drugs, therapy
MyCancerGenomeLYSMD3
Protein Interactions : CTDLYSMD3
Pharm GKB GenePA142671495
PharosQ7Z3D4
Clinical trialLYSMD3
Miscellaneous
canSAR (ICR)LYSMD3
HarmonizomeLYSMD3
DataMed IndexLYSMD3
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLYSMD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:06:39 CEST 2021

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