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LYSMD3 (LysM domain containing 3)

Identity

Alias_namesLysM, putative peptidoglycan-binding, domain containing 3
Alias_symbol (synonym)FLJ13542
Other alias-
HGNC (Hugo) LYSMD3
LocusID (NCBI) 116068
Atlas_Id 68734
Location 5q14.3  [Link to chromosome band 5q14]
Location_base_pair Starts at 90515626 and ends at 90529584 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LYSMD3   26969
Cards
Entrez_Gene (NCBI)LYSMD3  116068  LysM domain containing 3
Aliases
GeneCards (Weizmann)LYSMD3
Ensembl hg19 (Hinxton)ENSG00000176018 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176018 [Gene_View]  chr5:90515626-90529584 [Contig_View]  LYSMD3 [Vega]
ICGC DataPortalENSG00000176018
TCGA cBioPortalLYSMD3
AceView (NCBI)LYSMD3
Genatlas (Paris)LYSMD3
WikiGenes116068
SOURCE (Princeton)LYSMD3
Genetics Home Reference (NIH)LYSMD3
Genomic and cartography
GoldenPath hg38 (UCSC)LYSMD3  -     chr5:90515626-90529584 -  5q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LYSMD3  -     5q14.3   [Description]    (hg19-Feb_2009)
EnsemblLYSMD3 - 5q14.3 [CytoView hg19]  LYSMD3 - 5q14.3 [CytoView hg38]
Mapping of homologs : NCBILYSMD3 [Mapview hg19]  LYSMD3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023604 AK291478 AL137315 AL832721 AM393212
RefSeq transcript (Entrez)NM_001286812 NM_198273
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LYSMD3
Cluster EST : UnigeneHs.136235 [ NCBI ]
CGAP (NCI)Hs.136235
Alternative Splicing GalleryENSG00000176018
Gene ExpressionLYSMD3 [ NCBI-GEO ]   LYSMD3 [ EBI - ARRAY_EXPRESS ]   LYSMD3 [ SEEK ]   LYSMD3 [ MEM ]
Gene Expression Viewer (FireBrowse)LYSMD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116068
GTEX Portal (Tissue expression)LYSMD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z3D4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z3D4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z3D4
Splice isoforms : SwissVarQ7Z3D4
PhosPhoSitePlusQ7Z3D4
Domaine pattern : Prosite (Expaxy)LYSM (PS51782)   
Domains : Interpro (EBI)LysM_dom   
Domain families : Pfam (Sanger)LysM (PF01476)   
Domain families : Pfam (NCBI)pfam01476   
Domain families : Smart (EMBL)LysM (SM00257)  
Conserved Domain (NCBI)LYSMD3
DMDM Disease mutations116068
Blocks (Seattle)LYSMD3
SuperfamilyQ7Z3D4
Human Protein AtlasENSG00000176018
Peptide AtlasQ7Z3D4
IPIIPI00719714   IPI00784849   IPI00784891   IPI00964755   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z3D4
IntAct (EBI)Q7Z3D4
FunCoupENSG00000176018
BioGRIDLYSMD3
STRING (EMBL)LYSMD3
ZODIACLYSMD3
Ontologies - Pathways
QuickGOQ7Z3D4
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkLYSMD3
Atlas of Cancer Signalling NetworkLYSMD3
Wikipedia pathwaysLYSMD3
Orthology - Evolution
OrthoDB116068
GeneTree (enSembl)ENSG00000176018
Phylogenetic Trees/Animal Genes : TreeFamLYSMD3
HOVERGENQ7Z3D4
HOGENOMQ7Z3D4
Homologs : HomoloGeneLYSMD3
Homology/Alignments : Family Browser (UCSC)LYSMD3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLYSMD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LYSMD3
dbVarLYSMD3
ClinVarLYSMD3
1000_GenomesLYSMD3 
Exome Variant ServerLYSMD3
ExAC (Exome Aggregation Consortium)LYSMD3 (select the gene name)
Genetic variants : HAPMAP116068
Genomic Variants (DGV)LYSMD3 [DGVbeta]
DECIPHERLYSMD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLYSMD3 
Mutations
ICGC Data PortalLYSMD3 
TCGA Data PortalLYSMD3 
Broad Tumor PortalLYSMD3
OASIS PortalLYSMD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLYSMD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLYSMD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LYSMD3
DgiDB (Drug Gene Interaction Database)LYSMD3
DoCM (Curated mutations)LYSMD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LYSMD3 (select a term)
intoGenLYSMD3
Cancer3DLYSMD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLYSMD3
Genetic Testing Registry LYSMD3
NextProtQ7Z3D4 [Medical]
TSGene116068
GENETestsLYSMD3
Target ValidationLYSMD3
Huge Navigator LYSMD3 [HugePedia]
snp3D : Map Gene to Disease116068
BioCentury BCIQLYSMD3
ClinGenLYSMD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116068
Chemical/Pharm GKB GenePA142671495
Clinical trialLYSMD3
Miscellaneous
canSAR (ICR)LYSMD3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLYSMD3
EVEXLYSMD3
GoPubMedLYSMD3
iHOPLYSMD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed May 31 15:25:17 CEST 2017

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