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LYSMD4 (LysM domain containing 4)

Identity

Alias_namesLysM, putative peptidoglycan-binding, domain containing 4
Alias_symbol (synonym)FLJ33008
Other alias-
HGNC (Hugo) LYSMD4
LocusID (NCBI) 145748
Atlas_Id 68735
Location 15q26.3  [Link to chromosome band 15q26]
Location_base_pair Starts at 99727401 and ends at 99733444 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C15orf41 (15q14) / LYSMD4 (15q26.3)LYSMD4 (15q26.3) / SEC14L1 (17q25.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LYSMD4   26571
Cards
Entrez_Gene (NCBI)LYSMD4  145748  LysM domain containing 4
Aliases
GeneCards (Weizmann)LYSMD4
Ensembl hg19 (Hinxton)ENSG00000183060 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183060 [Gene_View]  chr15:99727401-99733444 [Contig_View]  LYSMD4 [Vega]
ICGC DataPortalENSG00000183060
TCGA cBioPortalLYSMD4
AceView (NCBI)LYSMD4
Genatlas (Paris)LYSMD4
WikiGenes145748
SOURCE (Princeton)LYSMD4
Genetics Home Reference (NIH)LYSMD4
Genomic and cartography
GoldenPath hg38 (UCSC)LYSMD4  -     chr15:99727401-99733444 -  15q26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LYSMD4  -     15q26.3   [Description]    (hg19-Feb_2009)
EnsemblLYSMD4 - 15q26.3 [CytoView hg19]  LYSMD4 - 15q26.3 [CytoView hg38]
Mapping of homologs : NCBILYSMD4 [Mapview hg19]  LYSMD4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056718 AK057570 AK124852 AK290296 BC041097
RefSeq transcript (Entrez)NM_001284417 NM_001284418 NM_001284419 NM_001284420 NM_001284421 NM_001284422 NM_152449
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LYSMD4
Cluster EST : UnigeneHs.562568 [ NCBI ]
CGAP (NCI)Hs.562568
Alternative Splicing GalleryENSG00000183060
Gene ExpressionLYSMD4 [ NCBI-GEO ]   LYSMD4 [ EBI - ARRAY_EXPRESS ]   LYSMD4 [ SEEK ]   LYSMD4 [ MEM ]
Gene Expression Viewer (FireBrowse)LYSMD4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)145748
GTEX Portal (Tissue expression)LYSMD4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5XG99   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5XG99  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5XG99
Splice isoforms : SwissVarQ5XG99
PhosPhoSitePlusQ5XG99
Domaine pattern : Prosite (Expaxy)LYSM (PS51782)   
Domains : Interpro (EBI)LysM_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)LysM (SM00257)  
Conserved Domain (NCBI)LYSMD4
DMDM Disease mutations145748
Blocks (Seattle)LYSMD4
SuperfamilyQ5XG99
Human Protein AtlasENSG00000183060
Peptide AtlasQ5XG99
HPRD08153
IPIIPI00478999   IPI00065412   IPI00790890   IPI00426017   IPI00853434   
Protein Interaction databases
DIP (DOE-UCLA)Q5XG99
IntAct (EBI)Q5XG99
FunCoupENSG00000183060
BioGRIDLYSMD4
STRING (EMBL)LYSMD4
ZODIACLYSMD4
Ontologies - Pathways
QuickGOQ5XG99
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkLYSMD4
Atlas of Cancer Signalling NetworkLYSMD4
Wikipedia pathwaysLYSMD4
Orthology - Evolution
OrthoDB145748
GeneTree (enSembl)ENSG00000183060
Phylogenetic Trees/Animal Genes : TreeFamLYSMD4
HOVERGENQ5XG99
HOGENOMQ5XG99
Homologs : HomoloGeneLYSMD4
Homology/Alignments : Family Browser (UCSC)LYSMD4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLYSMD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LYSMD4
dbVarLYSMD4
ClinVarLYSMD4
1000_GenomesLYSMD4 
Exome Variant ServerLYSMD4
ExAC (Exome Aggregation Consortium)LYSMD4 (select the gene name)
Genetic variants : HAPMAP145748
Genomic Variants (DGV)LYSMD4 [DGVbeta]
DECIPHERLYSMD4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLYSMD4 
Mutations
ICGC Data PortalLYSMD4 
TCGA Data PortalLYSMD4 
Broad Tumor PortalLYSMD4
OASIS PortalLYSMD4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLYSMD4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLYSMD4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LYSMD4
DgiDB (Drug Gene Interaction Database)LYSMD4
DoCM (Curated mutations)LYSMD4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LYSMD4 (select a term)
intoGenLYSMD4
Cancer3DLYSMD4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLYSMD4
Genetic Testing Registry LYSMD4
NextProtQ5XG99 [Medical]
TSGene145748
GENETestsLYSMD4
Target ValidationLYSMD4
Huge Navigator LYSMD4 [HugePedia]
snp3D : Map Gene to Disease145748
BioCentury BCIQLYSMD4
ClinGenLYSMD4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD145748
Chemical/Pharm GKB GenePA142671496
Clinical trialLYSMD4
Miscellaneous
canSAR (ICR)LYSMD4 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLYSMD4
EVEXLYSMD4
GoPubMedLYSMD4
iHOPLYSMD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed May 31 15:25:18 CEST 2017

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