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LYZL1 (lysozyme like 1)

Identity

Alias_nameslysozyme-like 1
Alias_symbol (synonym)MGC33408
LYC2
Other aliasKAAG648
LYZD1
PRO1278
bA534G20.1
HGNC (Hugo) LYZL1
LocusID (NCBI) 84569
Atlas_Id 68737
Location 10p12.1  [Link to chromosome band 10p12]
Location_base_pair Starts at 29289061 and ends at 29311229 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LYZL1   30502
Cards
Entrez_Gene (NCBI)LYZL1  84569  lysozyme like 1
AliasesKAAG648; LYC2; LYZD1; PRO1278; 
bA534G20.1
GeneCards (Weizmann)LYZL1
Ensembl hg19 (Hinxton)ENSG00000120563 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120563 [Gene_View]  chr10:29289061-29311229 [Contig_View]  LYZL1 [Vega]
ICGC DataPortalENSG00000120563
TCGA cBioPortalLYZL1
AceView (NCBI)LYZL1
Genatlas (Paris)LYZL1
WikiGenes84569
SOURCE (Princeton)LYZL1
Genetics Home Reference (NIH)LYZL1
Genomic and cartography
GoldenPath hg38 (UCSC)LYZL1  -     chr10:29289061-29311229 +  10p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LYZL1  -     10p12.1   [Description]    (hg19-Feb_2009)
EnsemblLYZL1 - 10p12.1 [CytoView hg19]  LYZL1 - 10p12.1 [CytoView hg38]
Mapping of homologs : NCBILYZL1 [Mapview hg19]  LYZL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI393331 AY358694 BC021730 BF057063 BG209290
RefSeq transcript (Entrez)NM_032517
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LYZL1
Cluster EST : UnigeneHs.558572 [ NCBI ]
CGAP (NCI)Hs.558572
Alternative Splicing GalleryENSG00000120563
Gene ExpressionLYZL1 [ NCBI-GEO ]   LYZL1 [ EBI - ARRAY_EXPRESS ]   LYZL1 [ SEEK ]   LYZL1 [ MEM ]
Gene Expression Viewer (FireBrowse)LYZL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84569
GTEX Portal (Tissue expression)LYZL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UWQ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UWQ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UWQ5
Splice isoforms : SwissVarQ6UWQ5
Catalytic activity : Enzyme3.2.1.17 [ Enzyme-Expasy ]   3.2.1.173.2.1.17 [ IntEnz-EBI ]   3.2.1.17 [ BRENDA ]   3.2.1.17 [ KEGG ]   
PhosPhoSitePlusQ6UWQ5
Domaine pattern : Prosite (Expaxy)LACTALBUMIN_LYSOZYME_1 (PS00128)    LACTALBUMIN_LYSOZYME_2 (PS51348)   
Domains : Interpro (EBI)Glyco_hydro_22    Glyco_hydro_22_CS    Glyco_hydro_22_lys    Lysozyme-like_dom    LYZL1/LYZL2   
Domain families : Pfam (Sanger)Lys (PF00062)   
Domain families : Pfam (NCBI)pfam00062   
Domain families : Smart (EMBL)LYZ1 (SM00263)  
Conserved Domain (NCBI)LYZL1
DMDM Disease mutations84569
Blocks (Seattle)LYZL1
SuperfamilyQ6UWQ5
Human Protein AtlasENSG00000120563
Peptide AtlasQ6UWQ5
HPRD14336
IPIIPI00760605   IPI00103192   
Protein Interaction databases
DIP (DOE-UCLA)Q6UWQ5
IntAct (EBI)Q6UWQ5
FunCoupENSG00000120563
BioGRIDLYZL1
STRING (EMBL)LYZL1
ZODIACLYZL1
Ontologies - Pathways
QuickGOQ6UWQ5
Ontology : AmiGOlysozyme activity  extracellular region  metabolic process  
Ontology : EGO-EBIlysozyme activity  extracellular region  metabolic process  
NDEx NetworkLYZL1
Atlas of Cancer Signalling NetworkLYZL1
Wikipedia pathwaysLYZL1
Orthology - Evolution
OrthoDB84569
GeneTree (enSembl)ENSG00000120563
Phylogenetic Trees/Animal Genes : TreeFamLYZL1
HOVERGENQ6UWQ5
HOGENOMQ6UWQ5
Homologs : HomoloGeneLYZL1
Homology/Alignments : Family Browser (UCSC)LYZL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLYZL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LYZL1
dbVarLYZL1
ClinVarLYZL1
1000_GenomesLYZL1 
Exome Variant ServerLYZL1
ExAC (Exome Aggregation Consortium)LYZL1 (select the gene name)
Genetic variants : HAPMAP84569
Genomic Variants (DGV)LYZL1 [DGVbeta]
DECIPHERLYZL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLYZL1 
Mutations
ICGC Data PortalLYZL1 
TCGA Data PortalLYZL1 
Broad Tumor PortalLYZL1
OASIS PortalLYZL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLYZL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLYZL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LYZL1
DgiDB (Drug Gene Interaction Database)LYZL1
DoCM (Curated mutations)LYZL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LYZL1 (select a term)
intoGenLYZL1
Cancer3DLYZL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLYZL1
Genetic Testing Registry LYZL1
NextProtQ6UWQ5 [Medical]
TSGene84569
GENETestsLYZL1
Target ValidationLYZL1
Huge Navigator LYZL1 [HugePedia]
snp3D : Map Gene to Disease84569
BioCentury BCIQLYZL1
ClinGenLYZL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84569
Chemical/Pharm GKB GenePA134868520
Clinical trialLYZL1
Miscellaneous
canSAR (ICR)LYZL1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLYZL1
EVEXLYZL1
GoPubMedLYZL1
iHOPLYZL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:26:47 CEST 2017

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