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LYZL1 (lysozyme like 1)

Identity

Alias (NCBI)KAAG648
LYC2
LYZD1
PRO1278
bA534G20.1
HGNC (Hugo) LYZL1
HGNC Alias symbMGC33408
LYC2
HGNC Previous namelysozyme-like 1
LocusID (NCBI) 84569
Atlas_Id 68737
Location 10p12.1  [Link to chromosome band 10p12]
Location_base_pair Starts at 29289070 and ends at 29311232 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)LYZL1   30502
Cards
Entrez_Gene (NCBI)LYZL1    lysozyme like 1
AliasesKAAG648; LYC2; LYZD1; PRO1278; 
bA534G20.1
GeneCards (Weizmann)LYZL1
Ensembl hg19 (Hinxton)ENSG00000120563 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120563 [Gene_View]  ENSG00000120563 [Sequence]  chr10:29289070-29311232 [Contig_View]  LYZL1 [Vega]
ICGC DataPortalENSG00000120563
TCGA cBioPortalLYZL1
AceView (NCBI)LYZL1
Genatlas (Paris)LYZL1
SOURCE (Princeton)LYZL1
Genetics Home Reference (NIH)LYZL1
Genomic and cartography
GoldenPath hg38 (UCSC)LYZL1  -     chr10:29289070-29311232 +  10p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LYZL1  -     10p12.1   [Description]    (hg19-Feb_2009)
GoldenPathLYZL1 - 10p12.1 [CytoView hg19]  LYZL1 - 10p12.1 [CytoView hg38]
ImmunoBaseENSG00000120563
Genome Data Viewer NCBILYZL1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI393331 AY358694 BC021730 BF057063 BG209290
RefSeq transcript (Entrez)NM_032517
Consensus coding sequences : CCDS (NCBI)LYZL1
Gene ExpressionLYZL1 [ NCBI-GEO ]   LYZL1 [ EBI - ARRAY_EXPRESS ]   LYZL1 [ SEEK ]   LYZL1 [ MEM ]
Gene Expression Viewer (FireBrowse)LYZL1 [ Firebrowse - Broad ]
GenevisibleExpression of LYZL1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84569
GTEX Portal (Tissue expression)LYZL1
Human Protein AtlasENSG00000120563-LYZL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UWQ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UWQ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UWQ5
Catalytic activity : Enzyme3.2.1.17 [ Enzyme-Expasy ]   3.2.1.173.2.1.17 [ IntEnz-EBI ]   3.2.1.17 [ BRENDA ]   3.2.1.17 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ6UWQ5
Domaine pattern : Prosite (Expaxy)GLYCOSYL_HYDROL_F22_1 (PS00128)    GLYCOSYL_HYDROL_F22_2 (PS51348)   
Domains : Interpro (EBI)Glyco_hydro_22    Glyco_hydro_22_CS    Glyco_hydro_22_lys    Lysozyme-like_dom_sf    LYZL1/LYZL2   
Domain families : Pfam (Sanger)Lys (PF00062)   
Domain families : Pfam (NCBI)pfam00062   
Domain families : Smart (EMBL)LYZ1 (SM00263)  
Conserved Domain (NCBI)LYZL1
SuperfamilyQ6UWQ5
AlphaFold pdb e-kbQ6UWQ5   
Human Protein Atlas [tissue]ENSG00000120563-LYZL1 [tissue]
HPRD14336
Protein Interaction databases
DIP (DOE-UCLA)Q6UWQ5
IntAct (EBI)Q6UWQ5
BioGRIDLYZL1
STRING (EMBL)LYZL1
ZODIACLYZL1
Ontologies - Pathways
QuickGOQ6UWQ5
Ontology : AmiGOlysozyme activity  extracellular region  metabolic process  
Ontology : EGO-EBIlysozyme activity  extracellular region  metabolic process  
Pathways : KEGGStarch and sucrose metabolism   
NDEx NetworkLYZL1
Atlas of Cancer Signalling NetworkLYZL1
Wikipedia pathwaysLYZL1
Orthology - Evolution
OrthoDB84569
GeneTree (enSembl)ENSG00000120563
Phylogenetic Trees/Animal Genes : TreeFamLYZL1
Homologs : HomoloGeneLYZL1
Homology/Alignments : Family Browser (UCSC)LYZL1
Gene fusions - Rearrangements
Fusion : QuiverLYZL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLYZL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LYZL1
dbVarLYZL1
ClinVarLYZL1
MonarchLYZL1
1000_GenomesLYZL1 
Exome Variant ServerLYZL1
GNOMAD BrowserENSG00000120563
Varsome BrowserLYZL1
ACMGLYZL1 variants
VarityQ6UWQ5
Genomic Variants (DGV)LYZL1 [DGVbeta]
DECIPHERLYZL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLYZL1 
Mutations
ICGC Data PortalLYZL1 
TCGA Data PortalLYZL1 
Broad Tumor PortalLYZL1
OASIS PortalLYZL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLYZL1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DLYZL1
Mutations and Diseases : HGMDLYZL1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaLYZL1
DgiDB (Drug Gene Interaction Database)LYZL1
DoCM (Curated mutations)LYZL1
CIViC (Clinical Interpretations of Variants in Cancer)LYZL1
Cancer3DLYZL1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLYZL1
MedgenLYZL1
Genetic Testing Registry LYZL1
NextProtQ6UWQ5 [Medical]
GENETestsLYZL1
Target ValidationLYZL1
Huge Navigator LYZL1 [HugePedia]
ClinGenLYZL1
Clinical trials, drugs, therapy
MyCancerGenomeLYZL1
Protein Interactions : CTDLYZL1
Pharm GKB GenePA134868520
PharosQ6UWQ5
Clinical trialLYZL1
Miscellaneous
canSAR (ICR)LYZL1
HarmonizomeLYZL1
DataMed IndexLYZL1
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLYZL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:06:40 CEST 2021

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