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LYZL2 (lysozyme like 2)

Identity

Alias_nameslysozyme-like 2
Other aliasLYZD2
HGNC (Hugo) LYZL2
LocusID (NCBI) 119180
Atlas_Id 68738
Location 10p11.23  [Link to chromosome band 10p11]
Location_base_pair Starts at 30611779 and ends at 30629718 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FBXO28 (1q42.11) / LYZL2 (10p11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LYZL2   29613
Cards
Entrez_Gene (NCBI)LYZL2  119180  lysozyme like 2
AliasesLYZD2
GeneCards (Weizmann)LYZL2
Ensembl hg19 (Hinxton)ENSG00000151033 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151033 [Gene_View]  chr10:30611779-30629718 [Contig_View]  LYZL2 [Vega]
ICGC DataPortalENSG00000151033
TCGA cBioPortalLYZL2
AceView (NCBI)LYZL2
Genatlas (Paris)LYZL2
WikiGenes119180
SOURCE (Princeton)LYZL2
Genetics Home Reference (NIH)LYZL2
Genomic and cartography
GoldenPath hg38 (UCSC)LYZL2  -     chr10:30611779-30629718 -  10p11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LYZL2  -     10p11.23   [Description]    (hg19-Feb_2009)
EnsemblLYZL2 - 10p11.23 [CytoView hg19]  LYZL2 - 10p11.23 [CytoView hg38]
Mapping of homologs : NCBILYZL2 [Mapview hg19]  LYZL2 [Mapview hg38]
OMIM612748   
Gene and transcription
Genbank (Entrez)AF139543 AI637906 BC066294 HQ448509
RefSeq transcript (Entrez)NM_183058
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LYZL2
Cluster EST : UnigeneHs.522610 [ NCBI ]
CGAP (NCI)Hs.522610
Alternative Splicing GalleryENSG00000151033
Gene ExpressionLYZL2 [ NCBI-GEO ]   LYZL2 [ EBI - ARRAY_EXPRESS ]   LYZL2 [ SEEK ]   LYZL2 [ MEM ]
Gene Expression Viewer (FireBrowse)LYZL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)119180
GTEX Portal (Tissue expression)LYZL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z4W2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z4W2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z4W2
Splice isoforms : SwissVarQ7Z4W2
Catalytic activity : Enzyme3.2.1.17 [ Enzyme-Expasy ]   3.2.1.173.2.1.17 [ IntEnz-EBI ]   3.2.1.17 [ BRENDA ]   3.2.1.17 [ KEGG ]   
PhosPhoSitePlusQ7Z4W2
Domaine pattern : Prosite (Expaxy)LACTALBUMIN_LYSOZYME_1 (PS00128)    LACTALBUMIN_LYSOZYME_2 (PS51348)   
Domains : Interpro (EBI)Glyco_hydro_22    Glyco_hydro_22_CS    Glyco_hydro_22_lys    Lysozyme-like_dom    LYZL1/LYZL2   
Domain families : Pfam (Sanger)Lys (PF00062)   
Domain families : Pfam (NCBI)pfam00062   
Domain families : Smart (EMBL)LYZ1 (SM00263)  
Conserved Domain (NCBI)LYZL2
DMDM Disease mutations119180
Blocks (Seattle)LYZL2
SuperfamilyQ7Z4W2
Human Protein AtlasENSG00000151033
Peptide AtlasQ7Z4W2
HPRD14337
IPIIPI00742810   IPI00054693   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z4W2
IntAct (EBI)Q7Z4W2
FunCoupENSG00000151033
BioGRIDLYZL2
STRING (EMBL)LYZL2
ZODIACLYZL2
Ontologies - Pathways
QuickGOQ7Z4W2
Ontology : AmiGOlysozyme activity  extracellular region  metabolic process  
Ontology : EGO-EBIlysozyme activity  extracellular region  metabolic process  
NDEx NetworkLYZL2
Atlas of Cancer Signalling NetworkLYZL2
Wikipedia pathwaysLYZL2
Orthology - Evolution
OrthoDB119180
GeneTree (enSembl)ENSG00000151033
Phylogenetic Trees/Animal Genes : TreeFamLYZL2
HOVERGENQ7Z4W2
HOGENOMQ7Z4W2
Homologs : HomoloGeneLYZL2
Homology/Alignments : Family Browser (UCSC)LYZL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLYZL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LYZL2
dbVarLYZL2
ClinVarLYZL2
1000_GenomesLYZL2 
Exome Variant ServerLYZL2
ExAC (Exome Aggregation Consortium)LYZL2 (select the gene name)
Genetic variants : HAPMAP119180
Genomic Variants (DGV)LYZL2 [DGVbeta]
DECIPHERLYZL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLYZL2 
Mutations
ICGC Data PortalLYZL2 
TCGA Data PortalLYZL2 
Broad Tumor PortalLYZL2
OASIS PortalLYZL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLYZL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLYZL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LYZL2
DgiDB (Drug Gene Interaction Database)LYZL2
DoCM (Curated mutations)LYZL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LYZL2 (select a term)
intoGenLYZL2
Cancer3DLYZL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612748   
Orphanet
MedgenLYZL2
Genetic Testing Registry LYZL2
NextProtQ7Z4W2 [Medical]
TSGene119180
GENETestsLYZL2
Target ValidationLYZL2
Huge Navigator LYZL2 [HugePedia]
snp3D : Map Gene to Disease119180
BioCentury BCIQLYZL2
ClinGenLYZL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD119180
Chemical/Pharm GKB GenePA134920379
Clinical trialLYZL2
Miscellaneous
canSAR (ICR)LYZL2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLYZL2
EVEXLYZL2
GoPubMedLYZL2
iHOPLYZL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:25:18 CEST 2017

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