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LYZL2 (lysozyme like 2)

Identity

Alias (NCBI)LYZD2
HGNC (Hugo) LYZL2
HGNC Previous namelysozyme-like 2
LocusID (NCBI) 119180
Atlas_Id 68738
Location 10p11.23  [Link to chromosome band 10p11]
Location_base_pair Starts at 30611779 and ends at 30629753 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FBXO28 (1q42.11) / LYZL2 (10p11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)LYZL2   29613
Cards
Entrez_Gene (NCBI)LYZL2    lysozyme like 2
AliasesLYZD2
GeneCards (Weizmann)LYZL2
Ensembl hg19 (Hinxton)ENSG00000151033 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151033 [Gene_View]  ENSG00000151033 [Sequence]  chr10:30611779-30629753 [Contig_View]  LYZL2 [Vega]
ICGC DataPortalENSG00000151033
TCGA cBioPortalLYZL2
AceView (NCBI)LYZL2
Genatlas (Paris)LYZL2
SOURCE (Princeton)LYZL2
Genetics Home Reference (NIH)LYZL2
Genomic and cartography
GoldenPath hg38 (UCSC)LYZL2  -     chr10:30611779-30629753 -  10p11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LYZL2  -     10p11.23   [Description]    (hg19-Feb_2009)
GoldenPathLYZL2 - 10p11.23 [CytoView hg19]  LYZL2 - 10p11.23 [CytoView hg38]
ImmunoBaseENSG00000151033
Genome Data Viewer NCBILYZL2 [Mapview hg19]  
OMIM612748   
Gene and transcription
Genbank (Entrez)AF139543 AI637906 BC066294
RefSeq transcript (Entrez)NM_183058
Consensus coding sequences : CCDS (NCBI)LYZL2
Gene ExpressionLYZL2 [ NCBI-GEO ]   LYZL2 [ EBI - ARRAY_EXPRESS ]   LYZL2 [ SEEK ]   LYZL2 [ MEM ]
Gene Expression Viewer (FireBrowse)LYZL2 [ Firebrowse - Broad ]
GenevisibleExpression of LYZL2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)119180
GTEX Portal (Tissue expression)LYZL2
Human Protein AtlasENSG00000151033-LYZL2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z4W2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z4W2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z4W2
Catalytic activity : Enzyme3.2.1.17 [ Enzyme-Expasy ]   3.2.1.173.2.1.17 [ IntEnz-EBI ]   3.2.1.17 [ BRENDA ]   3.2.1.17 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ7Z4W2
Domaine pattern : Prosite (Expaxy)GLYCOSYL_HYDROL_F22_1 (PS00128)    GLYCOSYL_HYDROL_F22_2 (PS51348)   
Domains : Interpro (EBI)Glyco_hydro_22    Glyco_hydro_22_CS    Glyco_hydro_22_lys    Lysozyme-like_dom_sf    LYZL1/LYZL2   
Domain families : Pfam (Sanger)Lys (PF00062)   
Domain families : Pfam (NCBI)pfam00062   
Domain families : Smart (EMBL)LYZ1 (SM00263)  
Conserved Domain (NCBI)LYZL2
SuperfamilyQ7Z4W2
AlphaFold pdb e-kbQ7Z4W2   
Human Protein Atlas [tissue]ENSG00000151033-LYZL2 [tissue]
HPRD14337
Protein Interaction databases
DIP (DOE-UCLA)Q7Z4W2
IntAct (EBI)Q7Z4W2
BioGRIDLYZL2
STRING (EMBL)LYZL2
ZODIACLYZL2
Ontologies - Pathways
QuickGOQ7Z4W2
Ontology : AmiGOlysozyme activity  extracellular region  metabolic process  
Ontology : EGO-EBIlysozyme activity  extracellular region  metabolic process  
NDEx NetworkLYZL2
Atlas of Cancer Signalling NetworkLYZL2
Wikipedia pathwaysLYZL2
Orthology - Evolution
OrthoDB119180
GeneTree (enSembl)ENSG00000151033
Phylogenetic Trees/Animal Genes : TreeFamLYZL2
Homologs : HomoloGeneLYZL2
Homology/Alignments : Family Browser (UCSC)LYZL2
Gene fusions - Rearrangements
Fusion : QuiverLYZL2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLYZL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LYZL2
dbVarLYZL2
ClinVarLYZL2
MonarchLYZL2
1000_GenomesLYZL2 
Exome Variant ServerLYZL2
GNOMAD BrowserENSG00000151033
Varsome BrowserLYZL2
ACMGLYZL2 variants
VarityQ7Z4W2
Genomic Variants (DGV)LYZL2 [DGVbeta]
DECIPHERLYZL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLYZL2 
Mutations
ICGC Data PortalLYZL2 
TCGA Data PortalLYZL2 
Broad Tumor PortalLYZL2
OASIS PortalLYZL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLYZL2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DLYZL2
Mutations and Diseases : HGMDLYZL2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaLYZL2
DgiDB (Drug Gene Interaction Database)LYZL2
DoCM (Curated mutations)LYZL2
CIViC (Clinical Interpretations of Variants in Cancer)LYZL2
Cancer3DLYZL2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612748   
Orphanet
DisGeNETLYZL2
MedgenLYZL2
Genetic Testing Registry LYZL2
NextProtQ7Z4W2 [Medical]
GENETestsLYZL2
Target ValidationLYZL2
Huge Navigator LYZL2 [HugePedia]
ClinGenLYZL2
Clinical trials, drugs, therapy
MyCancerGenomeLYZL2
Protein Interactions : CTDLYZL2
Pharm GKB GenePA134920379
PharosQ7Z4W2
Clinical trialLYZL2
Miscellaneous
canSAR (ICR)LYZL2
HarmonizomeLYZL2
DataMed IndexLYZL2
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLYZL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:06:40 CEST 2021

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