Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LYZL4 (lysozyme like 4)

Identity

Alias_nameslysozyme-like 4
Alias_symbol (synonym)MGC26768
LYC4
Other aliasLYZA
HGNC (Hugo) LYZL4
LocusID (NCBI) 131375
Atlas_Id 68739
Location 3p22.1  [Link to chromosome band 3p22]
Location_base_pair Starts at 42397078 and ends at 42410602 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LYZL4   28387
Cards
Entrez_Gene (NCBI)LYZL4  131375  lysozyme like 4
AliasesLYC4; LYZA
GeneCards (Weizmann)LYZL4
Ensembl hg19 (Hinxton)ENSG00000157093 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157093 [Gene_View]  chr3:42397078-42410602 [Contig_View]  LYZL4 [Vega]
ICGC DataPortalENSG00000157093
TCGA cBioPortalLYZL4
AceView (NCBI)LYZL4
Genatlas (Paris)LYZL4
WikiGenes131375
SOURCE (Princeton)LYZL4
Genetics Home Reference (NIH)LYZL4
Genomic and cartography
GoldenPath hg38 (UCSC)LYZL4  -     chr3:42397078-42410602 -  3p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LYZL4  -     3p22.1   [Description]    (hg19-Feb_2009)
EnsemblLYZL4 - 3p22.1 [CytoView hg19]  LYZL4 - 3p22.1 [CytoView hg38]
Mapping of homologs : NCBILYZL4 [Mapview hg19]  LYZL4 [Mapview hg38]
OMIM612750   
Gene and transcription
Genbank (Entrez)AF326749 AW273933 BC016747 BX282166 HQ447261
RefSeq transcript (Entrez)NM_001304386 NM_144634
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LYZL4
Cluster EST : UnigeneHs.234895 [ NCBI ]
CGAP (NCI)Hs.234895
Alternative Splicing GalleryENSG00000157093
Gene ExpressionLYZL4 [ NCBI-GEO ]   LYZL4 [ EBI - ARRAY_EXPRESS ]   LYZL4 [ SEEK ]   LYZL4 [ MEM ]
Gene Expression Viewer (FireBrowse)LYZL4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)131375
GTEX Portal (Tissue expression)LYZL4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96KX0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96KX0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96KX0
Splice isoforms : SwissVarQ96KX0
PhosPhoSitePlusQ96KX0
Domaine pattern : Prosite (Expaxy)LACTALBUMIN_LYSOZYME_1 (PS00128)    LACTALBUMIN_LYSOZYME_2 (PS51348)   
Domains : Interpro (EBI)Glyco_hydro_22    Glyco_hydro_22_CS    Glyco_hydro_22_lys    Lysozyme-like_dom    LYZL4   
Domain families : Pfam (Sanger)Lys (PF00062)   
Domain families : Pfam (NCBI)pfam00062   
Domain families : Smart (EMBL)LYZ1 (SM00263)  
Conserved Domain (NCBI)LYZL4
DMDM Disease mutations131375
Blocks (Seattle)LYZL4
SuperfamilyQ96KX0
Human Protein AtlasENSG00000157093
Peptide AtlasQ96KX0
HPRD14338
IPIIPI00064892   
Protein Interaction databases
DIP (DOE-UCLA)Q96KX0
IntAct (EBI)Q96KX0
FunCoupENSG00000157093
BioGRIDLYZL4
STRING (EMBL)LYZL4
ZODIACLYZL4
Ontologies - Pathways
QuickGOQ96KX0
Ontology : AmiGOacrosomal vesicle  lysozyme activity  extracellular space  nucleus  single fertilization  fertilization  sperm flagellum  defense response to bacterium  
Ontology : EGO-EBIacrosomal vesicle  lysozyme activity  extracellular space  nucleus  single fertilization  fertilization  sperm flagellum  defense response to bacterium  
NDEx NetworkLYZL4
Atlas of Cancer Signalling NetworkLYZL4
Wikipedia pathwaysLYZL4
Orthology - Evolution
OrthoDB131375
GeneTree (enSembl)ENSG00000157093
Phylogenetic Trees/Animal Genes : TreeFamLYZL4
HOVERGENQ96KX0
HOGENOMQ96KX0
Homologs : HomoloGeneLYZL4
Homology/Alignments : Family Browser (UCSC)LYZL4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLYZL4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LYZL4
dbVarLYZL4
ClinVarLYZL4
1000_GenomesLYZL4 
Exome Variant ServerLYZL4
ExAC (Exome Aggregation Consortium)LYZL4 (select the gene name)
Genetic variants : HAPMAP131375
Genomic Variants (DGV)LYZL4 [DGVbeta]
DECIPHERLYZL4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLYZL4 
Mutations
ICGC Data PortalLYZL4 
TCGA Data PortalLYZL4 
Broad Tumor PortalLYZL4
OASIS PortalLYZL4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLYZL4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLYZL4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LYZL4
DgiDB (Drug Gene Interaction Database)LYZL4
DoCM (Curated mutations)LYZL4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LYZL4 (select a term)
intoGenLYZL4
Cancer3DLYZL4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612750   
Orphanet
MedgenLYZL4
Genetic Testing Registry LYZL4
NextProtQ96KX0 [Medical]
TSGene131375
GENETestsLYZL4
Target ValidationLYZL4
Huge Navigator LYZL4 [HugePedia]
snp3D : Map Gene to Disease131375
BioCentury BCIQLYZL4
ClinGenLYZL4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD131375
Chemical/Pharm GKB GenePA134911368
Clinical trialLYZL4
Miscellaneous
canSAR (ICR)LYZL4 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLYZL4
EVEXLYZL4
GoPubMedLYZL4
iHOPLYZL4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:26:47 CEST 2017

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