Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LYZL6 (lysozyme-like 6)

Identity

Alias_nameslysozyme-like 6
Alias_symbol (synonym)LYC1
PRO1485
TKAL754
Other aliasUNQ754
HGNC (Hugo) LYZL6
LocusID (NCBI) 57151
Atlas_Id 68740
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 34261522 and ends at 34270714 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LYZL6   29614
Cards
Entrez_Gene (NCBI)LYZL6  57151  lysozyme-like 6
AliasesLYC1; PRO1485; TKAL754; UNQ754
GeneCards (Weizmann)LYZL6
Ensembl hg19 (Hinxton)ENSG00000275722 [Gene_View]  chr17:34261522-34270714 [Contig_View]  LYZL6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000275722 [Gene_View]  chr17:34261522-34270714 [Contig_View]  LYZL6 [Vega]
ICGC DataPortalENSG00000275722
TCGA cBioPortalLYZL6
AceView (NCBI)LYZL6
Genatlas (Paris)LYZL6
WikiGenes57151
SOURCE (Princeton)LYZL6
Genetics Home Reference (NIH)LYZL6
Genomic and cartography
GoldenPath hg19 (UCSC)LYZL6  -     chr17:34261522-34270714 -  17q12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LYZL6  -     17q12   [Description]    (hg38-Dec_2013)
EnsemblLYZL6 - 17q12 [CytoView hg19]  LYZL6 - 17q12 [CytoView hg38]
Mapping of homologs : NCBILYZL6 [Mapview hg19]  LYZL6 [Mapview hg38]
OMIM612751   
Gene and transcription
Genbank (Entrez)AY359018 AY742214 BC054481 BE550275 BG195727
RefSeq transcript (Entrez)NM_001199951 NM_020426
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NT_187614 NW_004929407
Consensus coding sequences : CCDS (NCBI)LYZL6
Cluster EST : UnigeneHs.97477 [ NCBI ]
CGAP (NCI)Hs.97477
Alternative Splicing GalleryENSG00000275722
Gene ExpressionLYZL6 [ NCBI-GEO ]   LYZL6 [ EBI - ARRAY_EXPRESS ]   LYZL6 [ SEEK ]   LYZL6 [ MEM ]
Gene Expression Viewer (FireBrowse)LYZL6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57151
GTEX Portal (Tissue expression)LYZL6
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75951   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75951  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75951
Splice isoforms : SwissVarO75951
Catalytic activity : Enzyme3.2.1.17 [ Enzyme-Expasy ]   3.2.1.173.2.1.17 [ IntEnz-EBI ]   3.2.1.17 [ BRENDA ]   3.2.1.17 [ KEGG ]   
PhosPhoSitePlusO75951
Domaine pattern : Prosite (Expaxy)LACTALBUMIN_LYSOZYME_1 (PS00128)    LACTALBUMIN_LYSOZYME_2 (PS51348)   
Domains : Interpro (EBI)Glyco_hydro_22    Glyco_hydro_22_CS    Glyco_hydro_22_lys    Lysozyme-like_dom    LYZL6   
Domain families : Pfam (Sanger)Lys (PF00062)   
Domain families : Pfam (NCBI)pfam00062   
Domain families : Smart (EMBL)LYZ1 (SM00263)  
Conserved Domain (NCBI)LYZL6
DMDM Disease mutations57151
Blocks (Seattle)LYZL6
SuperfamilyO75951
Human Protein AtlasENSG00000275722
Peptide AtlasO75951
HPRD14339
IPIIPI00007010   
Protein Interaction databases
DIP (DOE-UCLA)O75951
IntAct (EBI)O75951
FunCoupENSG00000275722
BioGRIDLYZL6
STRING (EMBL)LYZL6
ZODIACLYZL6
Ontologies - Pathways
QuickGOO75951
Ontology : AmiGOlysozyme activity  extracellular region  metabolic process  
Ontology : EGO-EBIlysozyme activity  extracellular region  metabolic process  
NDEx NetworkLYZL6
Atlas of Cancer Signalling NetworkLYZL6
Wikipedia pathwaysLYZL6
Orthology - Evolution
OrthoDB57151
GeneTree (enSembl)ENSG00000275722
Phylogenetic Trees/Animal Genes : TreeFamLYZL6
HOVERGENO75951
HOGENOMO75951
Homologs : HomoloGeneLYZL6
Homology/Alignments : Family Browser (UCSC)LYZL6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLYZL6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LYZL6
dbVarLYZL6
ClinVarLYZL6
1000_GenomesLYZL6 
Exome Variant ServerLYZL6
ExAC (Exome Aggregation Consortium)LYZL6 (select the gene name)
Genetic variants : HAPMAP57151
Genomic Variants (DGV)LYZL6 [DGVbeta]
DECIPHER (Syndromes)17:34261522-34270714  ENSG00000275722
CONAN: Copy Number AnalysisLYZL6 
Mutations
ICGC Data PortalLYZL6 
TCGA Data PortalLYZL6 
Broad Tumor PortalLYZL6
OASIS PortalLYZL6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLYZL6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLYZL6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LYZL6
DgiDB (Drug Gene Interaction Database)LYZL6
DoCM (Curated mutations)LYZL6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LYZL6 (select a term)
intoGenLYZL6
Cancer3DLYZL6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612751   
Orphanet
MedgenLYZL6
Genetic Testing Registry LYZL6
NextProtO75951 [Medical]
TSGene57151
GENETestsLYZL6
Huge Navigator LYZL6 [HugePedia]
snp3D : Map Gene to Disease57151
BioCentury BCIQLYZL6
ClinGenLYZL6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57151
Chemical/Pharm GKB GenePA134942111
Clinical trialLYZL6
Miscellaneous
canSAR (ICR)LYZL6 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLYZL6
EVEXLYZL6
GoPubMedLYZL6
iHOPLYZL6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:27:29 CET 2017

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