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LZTFL1 (leucine zipper transcription factor like 1)

Identity

Alias_namesleucine zipper transcription factor-like 1
Alias_symbol (synonym)BBS17
Other alias
HGNC (Hugo) LZTFL1
LocusID (NCBI) 54585
Atlas_Id 51493
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 45823318 and ends at 45915724 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LZTFL1   6741
Cards
Entrez_Gene (NCBI)LZTFL1  54585  leucine zipper transcription factor like 1
AliasesBBS17
GeneCards (Weizmann)LZTFL1
Ensembl hg19 (Hinxton)ENSG00000163818 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163818 [Gene_View]  chr3:45823318-45915724 [Contig_View]  LZTFL1 [Vega]
ICGC DataPortalENSG00000163818
TCGA cBioPortalLZTFL1
AceView (NCBI)LZTFL1
Genatlas (Paris)LZTFL1
WikiGenes54585
SOURCE (Princeton)LZTFL1
Genetics Home Reference (NIH)LZTFL1
Genomic and cartography
GoldenPath hg38 (UCSC)LZTFL1  -     chr3:45823318-45915724 -  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LZTFL1  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblLZTFL1 - 3p21.31 [CytoView hg19]  LZTFL1 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBILZTFL1 [Mapview hg19]  LZTFL1 [Mapview hg38]
OMIM606568   615994   
Gene and transcription
Genbank (Entrez)AJ297351 AK024323 AK027165 AK093705 AK129805
RefSeq transcript (Entrez)NM_001276378 NM_001276379 NM_020347
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LZTFL1
Cluster EST : UnigeneHs.30824 [ NCBI ]
CGAP (NCI)Hs.30824
Alternative Splicing GalleryENSG00000163818
Gene ExpressionLZTFL1 [ NCBI-GEO ]   LZTFL1 [ EBI - ARRAY_EXPRESS ]   LZTFL1 [ SEEK ]   LZTFL1 [ MEM ]
Gene Expression Viewer (FireBrowse)LZTFL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54585
GTEX Portal (Tissue expression)LZTFL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQ48   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQ48  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQ48
Splice isoforms : SwissVarQ9NQ48
PhosPhoSitePlusQ9NQ48
Domains : Interpro (EBI)LZTFL1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LZTFL1
DMDM Disease mutations54585
Blocks (Seattle)LZTFL1
SuperfamilyQ9NQ48
Human Protein AtlasENSG00000163818
Peptide AtlasQ9NQ48
HPRD07586
IPIIPI00299465   IPI00924698   IPI00964795   IPI00927453   IPI00924921   IPI00924468   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQ48
IntAct (EBI)Q9NQ48
FunCoupENSG00000163818
BioGRIDLZTFL1
STRING (EMBL)LZTFL1
ZODIACLZTFL1
Ontologies - Pathways
QuickGOQ9NQ48
Ontology : AmiGOprotein binding  cytosol  cytosol  protein complex binding  identical protein binding  negative regulation of protein localization to cilium  negative regulation of protein localization to ciliary membrane  
Ontology : EGO-EBIprotein binding  cytosol  cytosol  protein complex binding  identical protein binding  negative regulation of protein localization to cilium  negative regulation of protein localization to ciliary membrane  
NDEx NetworkLZTFL1
Atlas of Cancer Signalling NetworkLZTFL1
Wikipedia pathwaysLZTFL1
Orthology - Evolution
OrthoDB54585
GeneTree (enSembl)ENSG00000163818
Phylogenetic Trees/Animal Genes : TreeFamLZTFL1
HOVERGENQ9NQ48
HOGENOMQ9NQ48
Homologs : HomoloGeneLZTFL1
Homology/Alignments : Family Browser (UCSC)LZTFL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLZTFL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LZTFL1
dbVarLZTFL1
ClinVarLZTFL1
1000_GenomesLZTFL1 
Exome Variant ServerLZTFL1
ExAC (Exome Aggregation Consortium)LZTFL1 (select the gene name)
Genetic variants : HAPMAP54585
Genomic Variants (DGV)LZTFL1 [DGVbeta]
DECIPHERLZTFL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLZTFL1 
Mutations
ICGC Data PortalLZTFL1 
TCGA Data PortalLZTFL1 
Broad Tumor PortalLZTFL1
OASIS PortalLZTFL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLZTFL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLZTFL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
LOVD (Leiden Open Variation Database)EURO-WABB PROJECT OPEN VARIATION DATABASE
BioMutasearch LZTFL1
DgiDB (Drug Gene Interaction Database)LZTFL1
DoCM (Curated mutations)LZTFL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LZTFL1 (select a term)
intoGenLZTFL1
Cancer3DLZTFL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606568    615994   
Orphanet3244   
MedgenLZTFL1
Genetic Testing Registry LZTFL1
NextProtQ9NQ48 [Medical]
TSGene54585
GENETestsLZTFL1
Target ValidationLZTFL1
Huge Navigator LZTFL1 [HugePedia]
snp3D : Map Gene to Disease54585
BioCentury BCIQLZTFL1
ClinGenLZTFL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54585
Chemical/Pharm GKB GenePA30505
Clinical trialLZTFL1
Miscellaneous
canSAR (ICR)LZTFL1 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLZTFL1
EVEXLZTFL1
GoPubMedLZTFL1
iHOPLZTFL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:16:47 CEST 2017

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