Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LZTS3 (leucine zipper tumor suppressor family member 3)

Identity

Alias_symbol (synonym)ProSAPiP1
KIAA0552
Other aliasPROSAPIP1
HGNC (Hugo) LZTS3
LocusID (NCBI) 9762
Atlas_Id 53230
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 3162617 and ends at 3173592 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LZTS3   30139
Cards
Entrez_Gene (NCBI)LZTS3  9762  leucine zipper tumor suppressor family member 3
AliasesPROSAPIP1
GeneCards (Weizmann)LZTS3
Ensembl hg19 (Hinxton)ENSG00000088899 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000088899 [Gene_View]  chr20:3162617-3173592 [Contig_View]  LZTS3 [Vega]
ICGC DataPortalENSG00000088899
TCGA cBioPortalLZTS3
AceView (NCBI)LZTS3
Genatlas (Paris)LZTS3
WikiGenes9762
SOURCE (Princeton)LZTS3
Genetics Home Reference (NIH)LZTS3
Genomic and cartography
GoldenPath hg38 (UCSC)LZTS3  -     chr20:3162617-3173592 -  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LZTS3  -     20p13   [Description]    (hg19-Feb_2009)
EnsemblLZTS3 - 20p13 [CytoView hg19]  LZTS3 - 20p13 [CytoView hg38]
Mapping of homologs : NCBILZTS3 [Mapview hg19]  LZTS3 [Mapview hg38]
OMIM610484   
Gene and transcription
Genbank (Entrez)AB011124 BC038860 BU684906 DQ895655 HY126776
RefSeq transcript (Entrez)NM_001282533 NM_014731
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LZTS3
Cluster EST : UnigeneHs.90232 [ NCBI ]
CGAP (NCI)Hs.90232
Alternative Splicing GalleryENSG00000088899
Gene ExpressionLZTS3 [ NCBI-GEO ]   LZTS3 [ EBI - ARRAY_EXPRESS ]   LZTS3 [ SEEK ]   LZTS3 [ MEM ]
Gene Expression Viewer (FireBrowse)LZTS3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9762
GTEX Portal (Tissue expression)LZTS3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60299   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60299  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60299
Splice isoforms : SwissVarO60299
PhosPhoSitePlusO60299
Domains : Interpro (EBI)LZTS3   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LZTS3
DMDM Disease mutations9762
Blocks (Seattle)LZTS3
SuperfamilyO60299
Human Protein AtlasENSG00000088899
Peptide AtlasO60299
HPRD11461
IPIIPI00028588   IPI00332777   
Protein Interaction databases
DIP (DOE-UCLA)O60299
IntAct (EBI)O60299
FunCoupENSG00000088899
BioGRIDLZTS3
STRING (EMBL)LZTS3
ZODIACLZTS3
Ontologies - Pathways
QuickGOO60299
Ontology : AmiGOcytoplasm  cytoskeleton  postsynaptic density  cell junction  postsynaptic membrane  
Ontology : EGO-EBIcytoplasm  cytoskeleton  postsynaptic density  cell junction  postsynaptic membrane  
NDEx NetworkLZTS3
Atlas of Cancer Signalling NetworkLZTS3
Wikipedia pathwaysLZTS3
Orthology - Evolution
OrthoDB9762
GeneTree (enSembl)ENSG00000088899
Phylogenetic Trees/Animal Genes : TreeFamLZTS3
HOVERGENO60299
HOGENOMO60299
Homologs : HomoloGeneLZTS3
Homology/Alignments : Family Browser (UCSC)LZTS3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLZTS3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LZTS3
dbVarLZTS3
ClinVarLZTS3
1000_GenomesLZTS3 
Exome Variant ServerLZTS3
ExAC (Exome Aggregation Consortium)LZTS3 (select the gene name)
Genetic variants : HAPMAP9762
Genomic Variants (DGV)LZTS3 [DGVbeta]
DECIPHERLZTS3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLZTS3 
Mutations
ICGC Data PortalLZTS3 
TCGA Data PortalLZTS3 
Broad Tumor PortalLZTS3
OASIS PortalLZTS3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLZTS3
BioMutasearch LZTS3
DgiDB (Drug Gene Interaction Database)LZTS3
DoCM (Curated mutations)LZTS3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LZTS3 (select a term)
intoGenLZTS3
Cancer3DLZTS3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610484   
Orphanet
MedgenLZTS3
Genetic Testing Registry LZTS3
NextProtO60299 [Medical]
TSGene9762
GENETestsLZTS3
Target ValidationLZTS3
Huge Navigator LZTS3 [HugePedia]
snp3D : Map Gene to Disease9762
BioCentury BCIQLZTS3
ClinGenLZTS3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9762
Clinical trialLZTS3
Miscellaneous
canSAR (ICR)LZTS3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLZTS3
EVEXLZTS3
GoPubMedLZTS3
iHOPLZTS3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:06:03 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.