Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MAATS1 (MYCBP associated and testis expressed 1)

Identity

Alias_namesC3orf15
chromosome 3 open reading frame 15
MYCBP/AMY-1-associated, testis expressed 1
MYCBP-associated, testis expressed 1
Alias_symbol (synonym)AAT1
AAT1alpha
SPATA26
CaM-IP2
Other aliasCFAP91
HGNC (Hugo) MAATS1
LocusID (NCBI) 89876
Atlas_Id 68745
Location 3q13.33  [Link to chromosome band 3q13]
Location_base_pair Starts at 119703022 and ends at 119767102 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GSK3B (3q13.33) / MAATS1 (3q13.33)KIT (4q12) / MAATS1 (3q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAATS1   24010
Cards
Entrez_Gene (NCBI)MAATS1  89876  MYCBP associated and testis expressed 1
AliasesAAT1; AAT1alpha; C3orf15; CFAP91; 
CaM-IP2; SPATA26
GeneCards (Weizmann)MAATS1
Ensembl hg19 (Hinxton)ENSG00000183833 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183833 [Gene_View]  chr3:119703022-119767102 [Contig_View]  MAATS1 [Vega]
ICGC DataPortalENSG00000183833
TCGA cBioPortalMAATS1
AceView (NCBI)MAATS1
Genatlas (Paris)MAATS1
WikiGenes89876
SOURCE (Princeton)MAATS1
Genetics Home Reference (NIH)MAATS1
Genomic and cartography
GoldenPath hg38 (UCSC)MAATS1  -     chr3:119703022-119767102 +  3q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAATS1  -     3q13.33   [Description]    (hg19-Feb_2009)
EnsemblMAATS1 - 3q13.33 [CytoView hg19]  MAATS1 - 3q13.33 [CytoView hg38]
Mapping of homologs : NCBIMAATS1 [Mapview hg19]  MAATS1 [Mapview hg38]
OMIM609910   
Gene and transcription
Genbank (Entrez)AB063296 AB063297 AB063298 AF440403 AF497717
RefSeq transcript (Entrez)NM_001320316 NM_001320317 NM_001320318 NM_033364
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAATS1
Cluster EST : UnigeneHs.341906 [ NCBI ]
CGAP (NCI)Hs.341906
Alternative Splicing GalleryENSG00000183833
Gene ExpressionMAATS1 [ NCBI-GEO ]   MAATS1 [ EBI - ARRAY_EXPRESS ]   MAATS1 [ SEEK ]   MAATS1 [ MEM ]
Gene Expression Viewer (FireBrowse)MAATS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)89876
GTEX Portal (Tissue expression)MAATS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z4T9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z4T9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z4T9
Splice isoforms : SwissVarQ7Z4T9
PhosPhoSitePlusQ7Z4T9
Domains : Interpro (EBI)MAATS1    MAATS1_dom   
Domain families : Pfam (Sanger)PaaSYMP (PF14738)   
Domain families : Pfam (NCBI)pfam14738   
Conserved Domain (NCBI)MAATS1
DMDM Disease mutations89876
Blocks (Seattle)MAATS1
SuperfamilyQ7Z4T9
Human Protein AtlasENSG00000183833
Peptide AtlasQ7Z4T9
HPRD10782
IPIIPI00376045   IPI00749309   IPI00969116   IPI00607786   IPI00969133   IPI00797244   IPI00969208   IPI00909320   IPI00470511   IPI00946239   IPI00946542   IPI00947515   IPI00946730   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z4T9
IntAct (EBI)Q7Z4T9
FunCoupENSG00000183833
BioGRIDMAATS1
STRING (EMBL)MAATS1
ZODIACMAATS1
Ontologies - Pathways
QuickGOQ7Z4T9
Ontology : AmiGOradial spoke stalk  cilium movement  protein binding  mitochondrion  axoneme  motile cilium  
Ontology : EGO-EBIradial spoke stalk  cilium movement  protein binding  mitochondrion  axoneme  motile cilium  
NDEx NetworkMAATS1
Atlas of Cancer Signalling NetworkMAATS1
Wikipedia pathwaysMAATS1
Orthology - Evolution
OrthoDB89876
GeneTree (enSembl)ENSG00000183833
Phylogenetic Trees/Animal Genes : TreeFamMAATS1
HOVERGENQ7Z4T9
HOGENOMQ7Z4T9
Homologs : HomoloGeneMAATS1
Homology/Alignments : Family Browser (UCSC)MAATS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAATS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAATS1
dbVarMAATS1
ClinVarMAATS1
1000_GenomesMAATS1 
Exome Variant ServerMAATS1
ExAC (Exome Aggregation Consortium)MAATS1 (select the gene name)
Genetic variants : HAPMAP89876
Genomic Variants (DGV)MAATS1 [DGVbeta]
DECIPHERMAATS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAATS1 
Mutations
ICGC Data PortalMAATS1 
TCGA Data PortalMAATS1 
Broad Tumor PortalMAATS1
OASIS PortalMAATS1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAATS1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAATS1
BioMutasearch MAATS1
DgiDB (Drug Gene Interaction Database)MAATS1
DoCM (Curated mutations)MAATS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAATS1 (select a term)
intoGenMAATS1
Cancer3DMAATS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609910   
Orphanet
MedgenMAATS1
Genetic Testing Registry MAATS1
NextProtQ7Z4T9 [Medical]
TSGene89876
GENETestsMAATS1
Target ValidationMAATS1
Huge Navigator MAATS1 [HugePedia]
snp3D : Map Gene to Disease89876
BioCentury BCIQMAATS1
ClinGenMAATS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD89876
Chemical/Pharm GKB GenePA134904689
Clinical trialMAATS1
Miscellaneous
canSAR (ICR)MAATS1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAATS1
EVEXMAATS1
GoPubMedMAATS1
iHOPMAATS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:26:48 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.