Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MACROD2-IT1 (MACROD2 intronic transcript 1)

Identity

Alias_namesC20orf68
NCRNA00227
chromosome 20 open reading frame 68
non-protein coding RNA 227
MACROD2 intronic transcript 1 (non-protein coding)
Alias_symbol (synonym)bA467D7.4
Other alias
HGNC (Hugo) MACROD2-IT1
LocusID (NCBI) 140848
Atlas_Id 68750
Location 20p12.1  [Link to chromosome band 20p12]
Location_base_pair Starts at 14554384 and ends at 14628908 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MACROD2-IT1   16201
Cards
Entrez_Gene (NCBI)MACROD2-IT1  140848  MACROD2 intronic transcript 1
AliasesC20orf68; NCRNA00227; bA467D7.4
GeneCards (Weizmann)MACROD2-IT1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr20:14554384-14628908 [Contig_View]  MACROD2-IT1 [Vega]
TCGA cBioPortalMACROD2-IT1
AceView (NCBI)MACROD2-IT1
Genatlas (Paris)MACROD2-IT1
WikiGenes140848
SOURCE (Princeton)MACROD2-IT1
Genetics Home Reference (NIH)MACROD2-IT1
Genomic and cartography
GoldenPath hg38 (UCSC)MACROD2-IT1  -     chr20:14554384-14628908 +  20p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MACROD2-IT1  -     20p12.1   [Description]    (hg19-Feb_2009)
EnsemblMACROD2-IT1 - 20p12.1 [CytoView hg19]  MACROD2-IT1 - 20p12.1 [CytoView hg38]
Mapping of homologs : NCBIMACROD2-IT1 [Mapview hg19]  MACROD2-IT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)CR747489
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MACROD2-IT1
Cluster EST : UnigeneHs.570367 [ NCBI ]
CGAP (NCI)Hs.570367
Gene ExpressionMACROD2-IT1 [ NCBI-GEO ]   MACROD2-IT1 [ EBI - ARRAY_EXPRESS ]   MACROD2-IT1 [ SEEK ]   MACROD2-IT1 [ MEM ]
Gene Expression Viewer (FireBrowse)MACROD2-IT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)140848
GTEX Portal (Tissue expression)MACROD2-IT1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MACROD2-IT1
DMDM Disease mutations140848
Blocks (Seattle)MACROD2-IT1
Protein Interaction databases
BioGRIDMACROD2-IT1
STRING (EMBL)MACROD2-IT1
ZODIACMACROD2-IT1
Ontologies - Pathways
Huge Navigator MACROD2-IT1 [HugePedia]
snp3D : Map Gene to Disease140848
BioCentury BCIQMACROD2-IT1
ClinGenMACROD2-IT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140848
Chemical/Pharm GKB GenePA25778
Clinical trialMACROD2-IT1
Miscellaneous
canSAR (ICR)MACROD2-IT1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineMACROD2-IT1
EVEXMACROD2-IT1
GoPubMedMACROD2-IT1
iHOPMACROD2-IT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:25:20 CEST 2017

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