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MAGEA1 (MAGE family member A1)

Identity

Alias_namesMAGE1
melanoma antigen family A, 1 (directs expression of antigen MZ2-E)
melanoma antigen family A1
Alias_symbol (synonym)MGC9326
CT1.1
Other alias
HGNC (Hugo) MAGEA1
LocusID (NCBI) 4100
Atlas_Id 41241
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 152481522 and ends at 152486116 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAGEA1   6796
Cards
Entrez_Gene (NCBI)MAGEA1  4100  MAGE family member A1
AliasesCT1.1; MAGE1
GeneCards (Weizmann)MAGEA1
Ensembl hg19 (Hinxton)ENSG00000198681 [Gene_View]  chrX:152481522-152486116 [Contig_View]  MAGEA1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000198681 [Gene_View]  chrX:152481522-152486116 [Contig_View]  MAGEA1 [Vega]
ICGC DataPortalENSG00000198681
TCGA cBioPortalMAGEA1
AceView (NCBI)MAGEA1
Genatlas (Paris)MAGEA1
WikiGenes4100
SOURCE (Princeton)MAGEA1
Genetics Home Reference (NIH)MAGEA1
Genomic and cartography
GoldenPath hg19 (UCSC)MAGEA1  -     chrX:152481522-152486116 -  Xq28   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MAGEA1  -     Xq28   [Description]    (hg38-Dec_2013)
EnsemblMAGEA1 - Xq28 [CytoView hg19]  MAGEA1 - Xq28 [CytoView hg38]
Mapping of homologs : NCBIMAGEA1 [Mapview hg19]  MAGEA1 [Mapview hg38]
OMIM300016   
Gene and transcription
Genbank (Entrez)AF463515 AK314979 AY148486 BC017555 BP314195
RefSeq transcript (Entrez)NM_004988
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_013243 NT_011681 NW_004929448
Consensus coding sequences : CCDS (NCBI)MAGEA1
Cluster EST : UnigeneHs.72879 [ NCBI ]
CGAP (NCI)Hs.72879
Alternative Splicing GalleryENSG00000198681
Gene ExpressionMAGEA1 [ NCBI-GEO ]   MAGEA1 [ EBI - ARRAY_EXPRESS ]   MAGEA1 [ SEEK ]   MAGEA1 [ MEM ]
Gene Expression Viewer (FireBrowse)MAGEA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4100
GTEX Portal (Tissue expression)MAGEA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP43355   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP43355  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP43355
Splice isoforms : SwissVarP43355
PhosPhoSitePlusP43355
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MAGE_N    MAGEA1    MHD_dom   
Domain families : Pfam (Sanger)MAGE (PF01454)    MAGE_N (PF12440)   
Domain families : Pfam (NCBI)pfam01454    pfam12440   
Conserved Domain (NCBI)MAGEA1
DMDM Disease mutations4100
Blocks (Seattle)MAGEA1
PDB (SRS)1W72    3BO8   
PDB (PDBSum)1W72    3BO8   
PDB (IMB)1W72    3BO8   
PDB (RSDB)1W72    3BO8   
Structural Biology KnowledgeBase1W72    3BO8   
SCOP (Structural Classification of Proteins)1W72    3BO8   
CATH (Classification of proteins structures)1W72    3BO8   
SuperfamilyP43355
Human Protein AtlasENSG00000198681
Peptide AtlasP43355
HPRD02059
IPIIPI00301082   
Protein Interaction databases
DIP (DOE-UCLA)P43355
IntAct (EBI)P43355
FunCoupENSG00000198681
BioGRIDMAGEA1
STRING (EMBL)MAGEA1
ZODIACMAGEA1
Ontologies - Pathways
QuickGOP43355
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  protein binding  nucleus  cytoplasm  plasma membrane  transcription, DNA-templated  histone deacetylase binding  negative regulation of Notch signaling pathway  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  protein binding  nucleus  cytoplasm  plasma membrane  transcription, DNA-templated  histone deacetylase binding  negative regulation of Notch signaling pathway  
NDEx NetworkMAGEA1
Atlas of Cancer Signalling NetworkMAGEA1
Wikipedia pathwaysMAGEA1
Orthology - Evolution
OrthoDB4100
GeneTree (enSembl)ENSG00000198681
Phylogenetic Trees/Animal Genes : TreeFamMAGEA1
HOVERGENP43355
HOGENOMP43355
Homologs : HomoloGeneMAGEA1
Homology/Alignments : Family Browser (UCSC)MAGEA1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGEA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGEA1
dbVarMAGEA1
ClinVarMAGEA1
1000_GenomesMAGEA1 
Exome Variant ServerMAGEA1
ExAC (Exome Aggregation Consortium)MAGEA1 (select the gene name)
Genetic variants : HAPMAP4100
Genomic Variants (DGV)MAGEA1 [DGVbeta]
DECIPHER (Syndromes)X:152481522-152486116  ENSG00000198681
CONAN: Copy Number AnalysisMAGEA1 
Mutations
ICGC Data PortalMAGEA1 
TCGA Data PortalMAGEA1 
Broad Tumor PortalMAGEA1
OASIS PortalMAGEA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGEA1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAGEA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch MAGEA1
DgiDB (Drug Gene Interaction Database)MAGEA1
DoCM (Curated mutations)MAGEA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGEA1 (select a term)
intoGenMAGEA1
Cancer3DMAGEA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300016   
Orphanet
MedgenMAGEA1
Genetic Testing Registry MAGEA1
NextProtP43355 [Medical]
TSGene4100
GENETestsMAGEA1
Huge Navigator MAGEA1 [HugePedia]
snp3D : Map Gene to Disease4100
BioCentury BCIQMAGEA1
ClinGenMAGEA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4100
Chemical/Pharm GKB GenePA30542
Clinical trialMAGEA1
Miscellaneous
canSAR (ICR)MAGEA1 (select the gene name)
Probes
Litterature
PubMed59 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGEA1
EVEXMAGEA1
GoPubMedMAGEA1
iHOPMAGEA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:08:13 CEST 2017

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