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MAGEA10-MAGEA5 (MAGEA10-MAGEA5 readthrough)

Identity

Other aliasCT1.5
HGNC (Hugo) -
LocusID (NCBI) 100533997
Atlas_Id 68754
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 152114049 and ends at 152138578 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)MAGEA10-MAGEA5  100533997  MAGEA10-MAGEA5 readthrough
AliasesCT1.5
GeneCards (Weizmann)MAGEA10-MAGEA5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:152114049-152138578 [Contig_View]  MAGEA10-MAGEA5 [Vega]
TCGA cBioPortalMAGEA10-MAGEA5
AceView (NCBI)MAGEA10-MAGEA5
Genatlas (Paris)MAGEA10-MAGEA5
WikiGenes100533997
SOURCE (Princeton)MAGEA10-MAGEA5
Genetics Home Reference (NIH)MAGEA10-MAGEA5
Genomic and cartography
GoldenPath hg38 (UCSC)MAGEA10-MAGEA5  -     chrX:152114049-152138578 -  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAGEA10-MAGEA5  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblMAGEA10-MAGEA5 - Xq28 [CytoView hg19]  MAGEA10-MAGEA5 - Xq28 [CytoView hg38]
Mapping of homologs : NCBIMAGEA10-MAGEA5 [Mapview hg19]  MAGEA10-MAGEA5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX109673 FY212575 FY212810
RefSeq transcript (Entrez)NM_001204811
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAGEA10-MAGEA5
Cluster EST : UnigeneHs.18048 [ NCBI ]
CGAP (NCI)Hs.18048
Gene ExpressionMAGEA10-MAGEA5 [ NCBI-GEO ]   MAGEA10-MAGEA5 [ EBI - ARRAY_EXPRESS ]   MAGEA10-MAGEA5 [ SEEK ]   MAGEA10-MAGEA5 [ MEM ]
Gene Expression Viewer (FireBrowse)MAGEA10-MAGEA5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100533997
GTEX Portal (Tissue expression)MAGEA10-MAGEA5
Protein : pattern, domain, 3D structure
UniProt/SwissProtP43359   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP43359  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP43359
Splice isoforms : SwissVarP43359
PhosPhoSitePlusP43359
Domains : Interpro (EBI)MAGE_N    MAGEA4/MAGEA5   
Domain families : Pfam (Sanger)MAGE_N (PF12440)   
Domain families : Pfam (NCBI)pfam12440   
Domain families : Smart (EMBL)MAGE_N (SM01392)  
Conserved Domain (NCBI)MAGEA10-MAGEA5
DMDM Disease mutations100533997
Blocks (Seattle)MAGEA10-MAGEA5
SuperfamilyP43359
Peptide AtlasP43359
IPIIPI00018045   
Protein Interaction databases
DIP (DOE-UCLA)P43359
IntAct (EBI)P43359
BioGRIDMAGEA10-MAGEA5
STRING (EMBL)MAGEA10-MAGEA5
ZODIACMAGEA10-MAGEA5
Ontologies - Pathways
QuickGOP43359
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkMAGEA10-MAGEA5
Atlas of Cancer Signalling NetworkMAGEA10-MAGEA5
Wikipedia pathwaysMAGEA10-MAGEA5
Orthology - Evolution
OrthoDB100533997
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENP43359
HOGENOMP43359
Homologs : HomoloGeneMAGEA10-MAGEA5
Homology/Alignments : Family Browser (UCSC)MAGEA10-MAGEA5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGEA10-MAGEA5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGEA10-MAGEA5
dbVarMAGEA10-MAGEA5
ClinVarMAGEA10-MAGEA5
1000_GenomesMAGEA10-MAGEA5 
Exome Variant ServerMAGEA10-MAGEA5
ExAC (Exome Aggregation Consortium)MAGEA10-MAGEA5 (select the gene name)
Genetic variants : HAPMAP100533997
Genomic Variants (DGV)MAGEA10-MAGEA5 [DGVbeta]
DECIPHERMAGEA10-MAGEA5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAGEA10-MAGEA5 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch MAGEA10-MAGEA5
DgiDB (Drug Gene Interaction Database)MAGEA10-MAGEA5
DoCM (Curated mutations)MAGEA10-MAGEA5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGEA10-MAGEA5 (select a term)
intoGenMAGEA10-MAGEA5
Cancer3DMAGEA10-MAGEA5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMAGEA10-MAGEA5
Genetic Testing Registry MAGEA10-MAGEA5
NextProtP43359 [Medical]
TSGene100533997
GENETestsMAGEA10-MAGEA5
Target ValidationMAGEA10-MAGEA5
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100533997
BioCentury BCIQMAGEA10-MAGEA5
ClinGenMAGEA10-MAGEA5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100533997
Clinical trialMAGEA10-MAGEA5
Miscellaneous
canSAR (ICR)MAGEA10-MAGEA5 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGEA10-MAGEA5
EVEXMAGEA10-MAGEA5
GoPubMedMAGEA10-MAGEA5
iHOPMAGEA10-MAGEA5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:26:49 CEST 2017

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