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MAGEA10 (melanoma antigen family A, 10)

Identity

Other namesCT1.10
MAGE10
HGNC (Hugo) MAGEA10
LocusID (NCBI) 4109
Location Xq28
Location_base_pair Starts at 151301783 and ends at 151307050 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MAGEA10   6797
Cards
Entrez_Gene (NCBI)MAGEA10  4109  melanoma antigen family A, 10
GeneCards (Weizmann)MAGEA10
Ensembl hg19 (Hinxton)ENSG00000124260 [Gene_View]  chrX:151301783-151307050 [Contig_View]  MAGEA10 [Vega]
Ensembl hg38 (Hinxton)ENSG00000124260 [Gene_View]  chrX:151301783-151307050 [Contig_View]  MAGEA10 [Vega]
ICGC DataPortalENSG00000124260
cBioPortalMAGEA10
AceView (NCBI)MAGEA10
Genatlas (Paris)MAGEA10
WikiGenes4109
SOURCE (Princeton)MAGEA10
Genomic and cartography
GoldenPath hg19 (UCSC)MAGEA10  -     chrX:151301783-151307050 -  Xq28   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MAGEA10  -     Xq28   [Description]    (hg38-Dec_2013)
EnsemblMAGEA10 - Xq28 [CytoView hg19]  MAGEA10 - Xq28 [CytoView hg38]
Mapping of homologs : NCBIMAGEA10 [Mapview hg19]  MAGEA10 [Mapview hg38]
OMIM300343   
Gene and transcription
Genbank (Entrez)AK314161 AY522506 AY531264 BC004105 BQ026281
RefSeq transcript (Entrez)NM_001011543 NM_001251828 NM_021048
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NT_011681 NW_001842414 NW_004929448
Consensus coding sequences : CCDS (NCBI)MAGEA10
Cluster EST : UnigeneHs.18048 [ NCBI ]
CGAP (NCI)Hs.18048
Alternative Splicing : Fast-db (Paris)GSHG0034064
Alternative Splicing GalleryENSG00000124260
Gene ExpressionMAGEA10 [ NCBI-GEO ]     MAGEA10 [ SEEK ]   MAGEA10 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP43363 (Uniprot)
NextProtP43363  [Medical]
With graphics : InterProP43363
Splice isoforms : SwissVarP43363 (Swissvar)
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MAGE    Melanoma_ass_antigen_N   
Related proteins : CluSTrP43363
Domain families : Pfam (Sanger)MAGE (PF01454)    MAGE_N (PF12440)   
Domain families : Pfam (NCBI)pfam01454    pfam12440   
DMDM Disease mutations4109
Blocks (Seattle)P43363
Human Protein AtlasENSG00000124260
Peptide AtlasP43363
HPRD02280
IPIIPI00301104   IPI00643514   IPI00642999   
Protein Interaction databases
DIP (DOE-UCLA)P43363
IntAct (EBI)P43363
FunCoupENSG00000124260
BioGRIDMAGEA10
IntegromeDBMAGEA10
STRING (EMBL)MAGEA10
Ontologies - Pathways
QuickGOP43363
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
Protein Interaction DatabaseMAGEA10
DoCM (Curated mutations)MAGEA10
Wikipedia pathwaysMAGEA10
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerMAGEA10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGEA10
dbVarMAGEA10
ClinVarMAGEA10
1000_GenomesMAGEA10 
Exome Variant ServerMAGEA10
SNP (GeneSNP Utah)MAGEA10
SNP : HGBaseMAGEA10
Genetic variants : HAPMAPMAGEA10
Genomic VariantsMAGEA10  MAGEA10 [DGVbeta]
Mutations
ICGC Data PortalENSG00000124260 
Somatic Mutations in Cancer : COSMICMAGEA10 
CONAN: Copy Number AnalysisMAGEA10 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)X:151301783-151307050
Mutations and Diseases : HGMDMAGEA10
OMIM300343   
MedgenMAGEA10
NextProtP43363 [Medical]
GENETestsMAGEA10
Disease Genetic AssociationMAGEA10
Huge Navigator MAGEA10 [HugePedia]  MAGEA10 [HugeCancerGEM]
snp3D : Map Gene to Disease4109
DGIdb (Drug Gene Interaction db)MAGEA10
General knowledge
Homologs : HomoloGeneMAGEA10
Homology/Alignments : Family Browser (UCSC)MAGEA10
Phylogenetic Trees/Animal Genes : TreeFamMAGEA10
Chemical/Protein Interactions : CTD4109
Chemical/Pharm GKB GenePA30543
Clinical trialMAGEA10
Cancer Resource (Charite)ENSG00000124260
Other databases
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
CoreMineMAGEA10
GoPubMedMAGEA10
iHOPMAGEA10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 20 23:32:45 CET 2014

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