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MAGEA11 (MAGE family member A11)

Identity

Alias_namesMAGE11
melanoma antigen family A11
Alias_symbol (synonym)MAGE-11
MAGEA-11
MGC10511
CT1.11
Other alias
HGNC (Hugo) MAGEA11
LocusID (NCBI) 4110
Atlas_Id 41243
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 149688237 and ends at 149717268 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAGEA11   6798
Cards
Entrez_Gene (NCBI)MAGEA11  4110  MAGE family member A11
AliasesCT1.11; MAGE-11; MAGE11; MAGEA-11
GeneCards (Weizmann)MAGEA11
Ensembl hg19 (Hinxton)ENSG00000185247 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185247 [Gene_View]  chrX:149688237-149717268 [Contig_View]  MAGEA11 [Vega]
ICGC DataPortalENSG00000185247
TCGA cBioPortalMAGEA11
AceView (NCBI)MAGEA11
Genatlas (Paris)MAGEA11
WikiGenes4110
SOURCE (Princeton)MAGEA11
Genetics Home Reference (NIH)MAGEA11
Genomic and cartography
GoldenPath hg38 (UCSC)MAGEA11  -     chrX:149688237-149717268 +  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAGEA11  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblMAGEA11 - Xq28 [CytoView hg19]  MAGEA11 - Xq28 [CytoView hg38]
Mapping of homologs : NCBIMAGEA11 [Mapview hg19]  MAGEA11 [Mapview hg38]
OMIM300344   
Gene and transcription
Genbank (Entrez)AI691089 AK127849 AY747607 BC004479 BQ212898
RefSeq transcript (Entrez)NM_001011544 NM_005366
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAGEA11
Cluster EST : UnigeneHs.670252 [ NCBI ]
CGAP (NCI)Hs.670252
Alternative Splicing GalleryENSG00000185247
Gene ExpressionMAGEA11 [ NCBI-GEO ]   MAGEA11 [ EBI - ARRAY_EXPRESS ]   MAGEA11 [ SEEK ]   MAGEA11 [ MEM ]
Gene Expression Viewer (FireBrowse)MAGEA11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4110
GTEX Portal (Tissue expression)MAGEA11
Protein : pattern, domain, 3D structure
UniProt/SwissProtP43364   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP43364  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP43364
Splice isoforms : SwissVarP43364
PhosPhoSitePlusP43364
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MAGE_N    MAGEA11    MHD_dom   
Domain families : Pfam (Sanger)MAGE (PF01454)    MAGE_N (PF12440)   
Domain families : Pfam (NCBI)pfam01454    pfam12440   
Domain families : Smart (EMBL)MAGE (SM01373)  MAGE_N (SM01392)  
Conserved Domain (NCBI)MAGEA11
DMDM Disease mutations4110
Blocks (Seattle)MAGEA11
SuperfamilyP43364
Human Protein AtlasENSG00000185247
Peptide AtlasP43364
HPRD02281
IPIIPI00554535   IPI00018077   
Protein Interaction databases
DIP (DOE-UCLA)P43364
IntAct (EBI)P43364
FunCoupENSG00000185247
BioGRIDMAGEA11
STRING (EMBL)MAGEA11
ZODIACMAGEA11
Ontologies - Pathways
QuickGOP43364
Ontology : AmiGOprotein binding  nucleoplasm  cytosol  nuclear body  
Ontology : EGO-EBIprotein binding  nucleoplasm  cytosol  nuclear body  
NDEx NetworkMAGEA11
Atlas of Cancer Signalling NetworkMAGEA11
Wikipedia pathwaysMAGEA11
Orthology - Evolution
OrthoDB4110
GeneTree (enSembl)ENSG00000185247
Phylogenetic Trees/Animal Genes : TreeFamMAGEA11
HOVERGENP43364
HOGENOMP43364
Homologs : HomoloGeneMAGEA11
Homology/Alignments : Family Browser (UCSC)MAGEA11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGEA11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGEA11
dbVarMAGEA11
ClinVarMAGEA11
1000_GenomesMAGEA11 
Exome Variant ServerMAGEA11
ExAC (Exome Aggregation Consortium)MAGEA11 (select the gene name)
Genetic variants : HAPMAP4110
Genomic Variants (DGV)MAGEA11 [DGVbeta]
DECIPHERMAGEA11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAGEA11 
Mutations
ICGC Data PortalMAGEA11 
TCGA Data PortalMAGEA11 
Broad Tumor PortalMAGEA11
OASIS PortalMAGEA11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGEA11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAGEA11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch MAGEA11
DgiDB (Drug Gene Interaction Database)MAGEA11
DoCM (Curated mutations)MAGEA11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGEA11 (select a term)
intoGenMAGEA11
Cancer3DMAGEA11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300344   
Orphanet
MedgenMAGEA11
Genetic Testing Registry MAGEA11
NextProtP43364 [Medical]
TSGene4110
GENETestsMAGEA11
Target ValidationMAGEA11
Huge Navigator MAGEA11 [HugePedia]
snp3D : Map Gene to Disease4110
BioCentury BCIQMAGEA11
ClinGenMAGEA11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4110
Chemical/Pharm GKB GenePA30544
Clinical trialMAGEA11
Miscellaneous
canSAR (ICR)MAGEA11 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGEA11
EVEXMAGEA11
GoPubMedMAGEA11
iHOPMAGEA11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:58:30 CEST 2017

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