Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MAGEA12 (MAGE family member A12)

Identity

Alias_namesmember 12
MAGE12
Alias_symbol (synonym)CT1.12
Other alias
HGNC (Hugo) MAGEA12
LocusID (NCBI) 4111
Atlas_Id 41244
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 152733862 and ends at 152737669 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAGEA12   6799
Cards
Entrez_Gene (NCBI)MAGEA12  4111  MAGE family member A12
AliasesCT1.12; MAGE12
GeneCards (Weizmann)MAGEA12
Ensembl hg19 (Hinxton)ENSG00000213401 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213401 [Gene_View]  chrX:152733862-152737669 [Contig_View]  MAGEA12 [Vega]
ICGC DataPortalENSG00000213401
TCGA cBioPortalMAGEA12
AceView (NCBI)MAGEA12
Genatlas (Paris)MAGEA12
WikiGenes4111
SOURCE (Princeton)MAGEA12
Genetics Home Reference (NIH)MAGEA12
Genomic and cartography
GoldenPath hg38 (UCSC)MAGEA12  -     chrX:152733862-152737669 +  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAGEA12  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblMAGEA12 - Xq28 [CytoView hg19]  MAGEA12 - Xq28 [CytoView hg38]
Mapping of homologs : NCBIMAGEA12 [Mapview hg19]  MAGEA12 [Mapview hg38]
OMIM300177   
Gene and transcription
Genbank (Entrez)AK314168 BC003408 BC098146 BQ436888 BT007108
RefSeq transcript (Entrez)NM_001166386 NM_001166387 NM_005367
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAGEA12
Cluster EST : UnigeneHs.169246 [ NCBI ]
CGAP (NCI)Hs.169246
Alternative Splicing GalleryENSG00000213401
Gene ExpressionMAGEA12 [ NCBI-GEO ]   MAGEA12 [ EBI - ARRAY_EXPRESS ]   MAGEA12 [ SEEK ]   MAGEA12 [ MEM ]
Gene Expression Viewer (FireBrowse)MAGEA12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4111
GTEX Portal (Tissue expression)MAGEA12
Protein : pattern, domain, 3D structure
UniProt/SwissProtP43365   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP43365  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP43365
Splice isoforms : SwissVarP43365
PhosPhoSitePlusP43365
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MAGE_N    MHD_dom   
Domain families : Pfam (Sanger)MAGE (PF01454)    MAGE_N (PF12440)   
Domain families : Pfam (NCBI)pfam01454    pfam12440   
Domain families : Smart (EMBL)MAGE (SM01373)  MAGE_N (SM01392)  
Conserved Domain (NCBI)MAGEA12
DMDM Disease mutations4111
Blocks (Seattle)MAGEA12
SuperfamilyP43365
Human Protein AtlasENSG00000213401
Peptide AtlasP43365
HPRD02169
IPIIPI00018078   
Protein Interaction databases
DIP (DOE-UCLA)P43365
IntAct (EBI)P43365
FunCoupENSG00000213401
BioGRIDMAGEA12
STRING (EMBL)MAGEA12
ZODIACMAGEA12
Ontologies - Pathways
QuickGOP43365
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkMAGEA12
Atlas of Cancer Signalling NetworkMAGEA12
Wikipedia pathwaysMAGEA12
Orthology - Evolution
OrthoDB4111
GeneTree (enSembl)ENSG00000213401
Phylogenetic Trees/Animal Genes : TreeFamMAGEA12
HOVERGENP43365
HOGENOMP43365
Homologs : HomoloGeneMAGEA12
Homology/Alignments : Family Browser (UCSC)MAGEA12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGEA12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGEA12
dbVarMAGEA12
ClinVarMAGEA12
1000_GenomesMAGEA12 
Exome Variant ServerMAGEA12
ExAC (Exome Aggregation Consortium)MAGEA12 (select the gene name)
Genetic variants : HAPMAP4111
Genomic Variants (DGV)MAGEA12 [DGVbeta]
DECIPHERMAGEA12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAGEA12 
Mutations
ICGC Data PortalMAGEA12 
TCGA Data PortalMAGEA12 
Broad Tumor PortalMAGEA12
OASIS PortalMAGEA12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGEA12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAGEA12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch MAGEA12
DgiDB (Drug Gene Interaction Database)MAGEA12
DoCM (Curated mutations)MAGEA12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGEA12 (select a term)
intoGenMAGEA12
Cancer3DMAGEA12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300177   
Orphanet
MedgenMAGEA12
Genetic Testing Registry MAGEA12
NextProtP43365 [Medical]
TSGene4111
GENETestsMAGEA12
Target ValidationMAGEA12
Huge Navigator MAGEA12 [HugePedia]
snp3D : Map Gene to Disease4111
BioCentury BCIQMAGEA12
ClinGenMAGEA12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4111
Chemical/Pharm GKB GenePA30545
Clinical trialMAGEA12
Miscellaneous
canSAR (ICR)MAGEA12 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGEA12
EVEXMAGEA12
GoPubMedMAGEA12
iHOPMAGEA12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:41:55 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.