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MAGEA13P (MAGE family member A13, pseudogene)

Identity

Alias_namesmelanoma antigen family A13
Alias_symbol (synonym)LOC139363
Other alias-
HGNC (Hugo) MAGEA13P
LocusID (NCBI) 139363
Atlas_Id 50458
Location Xq26.3  [Link to chromosome band Xq26]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)MAGEA13P   35154
Cards
Entrez_Gene (NCBI)MAGEA13P  139363  MAGE family member A13, pseudogene
Aliases
GeneCards (Weizmann)MAGEA13P
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  - [Contig_View]  MAGEA13P [Vega]
TCGA cBioPortalMAGEA13P
AceView (NCBI)MAGEA13P
Genatlas (Paris)MAGEA13P
WikiGenes139363
SOURCE (Princeton)MAGEA13P
Genetics Home Reference (NIH)MAGEA13P
Genomic and cartography
GoldenPath hg38 (UCSC)MAGEA13P  -  
GoldenPath hg19 (UCSC)MAGEA13P  -  
EnsemblMAGEA13P - [CytoView hg19]  MAGEA13P - [CytoView hg38]
Mapping of homologs : NCBIMAGEA13P [Mapview hg19]  MAGEA13P [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAGEA13P
Gene ExpressionMAGEA13P [ NCBI-GEO ]   MAGEA13P [ EBI - ARRAY_EXPRESS ]   MAGEA13P [ SEEK ]   MAGEA13P [ MEM ]
Gene Expression Viewer (FireBrowse)MAGEA13P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)139363
GTEX Portal (Tissue expression)MAGEA13P
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NCF6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NCF6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NCF6
Splice isoforms : SwissVarA6NCF6
PhosPhoSitePlusA6NCF6
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MAGE_N    MHD_dom   
Domain families : Pfam (Sanger)MAGE_N (PF12440)   
Domain families : Pfam (NCBI)pfam12440   
Domain families : Smart (EMBL)MAGE (SM01373)  MAGE_N (SM01392)  
Conserved Domain (NCBI)MAGEA13P
DMDM Disease mutations139363
Blocks (Seattle)MAGEA13P
SuperfamilyA6NCF6
Peptide AtlasA6NCF6
IPIIPI00455971   
Protein Interaction databases
DIP (DOE-UCLA)A6NCF6
IntAct (EBI)A6NCF6
BioGRIDMAGEA13P
STRING (EMBL)MAGEA13P
ZODIACMAGEA13P
Ontologies - Pathways
QuickGOA6NCF6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkMAGEA13P
Atlas of Cancer Signalling NetworkMAGEA13P
Wikipedia pathwaysMAGEA13P
Orthology - Evolution
OrthoDB139363
Phylogenetic Trees/Animal Genes : TreeFamMAGEA13P
HOVERGENA6NCF6
HOGENOMA6NCF6
Homologs : HomoloGeneMAGEA13P
Homology/Alignments : Family Browser (UCSC)MAGEA13P
Gene fusions - Rearrangements
Tumor Fusion PortalMAGEA13P
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGEA13P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGEA13P
dbVarMAGEA13P
ClinVarMAGEA13P
1000_GenomesMAGEA13P 
Exome Variant ServerMAGEA13P
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP139363
Genomic Variants (DGV)MAGEA13P [DGVbeta]
DECIPHERMAGEA13P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAGEA13P 
Mutations
ICGC Data PortalMAGEA13P 
TCGA Data PortalMAGEA13P 
Broad Tumor PortalMAGEA13P
OASIS PortalMAGEA13P [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGEA13P  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAGEA13P
BioMutasearch MAGEA13P
DgiDB (Drug Gene Interaction Database)MAGEA13P
DoCM (Curated mutations)MAGEA13P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGEA13P (select a term)
intoGenMAGEA13P
Cancer3DMAGEA13P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETMAGEA13P
MedgenMAGEA13P
Genetic Testing Registry MAGEA13P
NextProtA6NCF6 [Medical]
TSGene139363
GENETestsMAGEA13P
Target ValidationMAGEA13P
Huge Navigator MAGEA13P [HugePedia]
snp3D : Map Gene to Disease139363
BioCentury BCIQMAGEA13P
ClinGenMAGEA13P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD139363
Clinical trialMAGEA13P
Miscellaneous
canSAR (ICR)MAGEA13P (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGEA13P
EVEXMAGEA13P
GoPubMedMAGEA13P
iHOPMAGEA13P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:21:18 CET 2017

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