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MAGEA5 (melanoma antigen family A, 5)

Identity

Other namesCT1.5
MAGE5
MAGEA4
HGNC (Hugo) MAGEA5
LocusID (NCBI) 4104
Location Xq28
Location_base_pair Starts at 151282521 and ends at 151286411 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MAGEA5   6803
Entrez_Gene (NCBI)MAGEA5  4104  melanoma antigen family A, 5
Cards
GeneCards (Weizmann)MAGEA5
Ensembl (Hinxton)ENSG00000242520 [Gene_View]  chrX:151282521-151286411 [Contig_View]  MAGEA5 [Vega]
AceView (NCBI)MAGEA5
Genatlas (Paris)MAGEA5
SOURCE (Stanford)NM_021049
Genomic and cartography
GoldenPath (UCSC)MAGEA5  -  Xq28   chrX:151282521-151286411 -  Xq28   [Description]    (hg19-Feb_2009)
EnsemblMAGEA5 - Xq28 [CytoView]
Mapping of homologs : NCBIMAGEA5 [Mapview]
OMIM300340   
Gene and transcription
Genbank (Entrez)AI200443 AY310324 BC109187
RefSeq transcript (SRS)NM_021049
RefSeq transcript (Entrez)NM_021049
RefSeq genomic (SRS)AC_000155 NC_000023 NC_018934 NG_016417 NT_167198 NW_001842414 NW_004078126
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NG_016417 NT_167198 NW_001842414 NW_004078126
Consensus coding sequences : CCDS (NCBI)MAGEA5
Cluster EST : UnigeneHs.668021 [ SRS ] Hs.668021 [ NCBI ]
CGAP (NCI)Hs.668021
Alternative Splicing : Fast-db (Paris)GSHG0034064
Alternative Splicing GalleryENSG00000242520
Gene ExpressionMAGEA5 [ NCBI-GEO ]   MAGEA5 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP43359 (SRS) P43359 (Uniprot)
NextProtP43359
With graphics : InterProP43359
Splice isoforms : SwissVarP43359(Swissvar)
Domaine pattern : Prosite (SRS)MAGE (PS50838)   
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (SRS)MAGE    Melanoma_ass_antigen_N   
Domains : Interpro (EBI)MAGE    Melanoma_ass_antigen_N   
Related proteins : CluSTrP43359
Domain families : Pfam (SRS)MAGE_N (PF12440)   
Domain families : Pfam (Sanger)MAGE_N (PF12440)   
Domain families : Pfam (NCBI)pfam12440   
DMDM4104
Blocks (Seattle)P43359
Human Protein AtlasENSG00000242520
HPRD02277
Protein Interaction databases
DIP (DOE-UCLA)P43359
IntAct (EBI)P43359
FunCoupENSG00000242520
REACTOMEMAGEA5
Protein Interaction Database4104
BioGRIDMAGEA5
InParanoidP43359
Interologous Interaction database P43359
IntegromeDBMAGEA5
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)MAGEA5
SNP (GeneSNP Utah)MAGEA5
SNP : HGBaseMAGEA5
Genetic variants : HAPMAPMAGEA5
Somatic Mutations in Cancer : COSMICMAGEA5 
CONAN: Copy Number AnalysisMAGEA5 
Mutations and Diseases : HGMDMAGEA5
OMIM300340   
GENETests300340   
Disease Genetic AssociationMAGEA5
Huge Navigator MAGEA5 [HugePedia]  MAGEA5 [HugeCancerGEM]
Genomic VariantsMAGEA5  MAGEA5 [DGVbeta]
snp3D : Map Gene to Disease4104
General knowledge
Homologs : HomoloGeneMAGEA5
Homology/Alignments : Family Browser (UCSC)MAGEA5
Phylogenetic Trees/Animal Genes : TreeFamMAGEA5
Chemical/Protein Interactions : CTD4104
Chemical/Pharm GKB GenePA30549
Clinical trialMAGEA5
Cancer Resource (Charite)ENSG00000242520
Ontology : AmiGO
Ontology : EGO-EBI
Other databases
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
PubGeneMAGEA5
iHOPMAGEA5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:37:50 CEST 2013
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