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MAGEA5 (MAGE family member A5)

Identity

Alias_namesMAGE5
melanoma antigen family A5
Alias_symbol (synonym)MGC129526
CT1.5
HGNC (Hugo) MAGEA5
LocusID (NCBI) 4104
Atlas_Id 41248
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 151282521 and ends at 151286411 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MAGEA5 (Xq28) / MAGEA10 (Xq28)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAGEA5   6803
Cards
Entrez_Gene (NCBI)MAGEA5  4104  MAGE family member A5
AliasesCT1.5; MAGE5; MAGEA4
GeneCards (Weizmann)MAGEA5
Ensembl hg19 (Hinxton)ENSG00000242520 [Gene_View]  chrX:151282521-151286411 [Contig_View]  MAGEA5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000242520 [Gene_View]  chrX:151282521-151286411 [Contig_View]  MAGEA5 [Vega]
ICGC DataPortalENSG00000242520
TCGA cBioPortalMAGEA5
AceView (NCBI)MAGEA5
Genatlas (Paris)MAGEA5
WikiGenes4104
SOURCE (Princeton)MAGEA5
Genetics Home Reference (NIH)MAGEA5
Genomic and cartography
GoldenPath hg19 (UCSC)MAGEA5  -     chrX:151282521-151286411 -  Xq28   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MAGEA5  -     Xq28   [Description]    (hg38-Dec_2013)
EnsemblMAGEA5 - Xq28 [CytoView hg19]  MAGEA5 - Xq28 [CytoView hg38]
Mapping of homologs : NCBIMAGEA5 [Mapview hg19]  MAGEA5 [Mapview hg38]
OMIM300340   
Gene and transcription
Genbank (Entrez)AI200443 AY310324 BC109187
RefSeq transcript (Entrez)NM_021049
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_016417 NT_011681 NW_004929448
Consensus coding sequences : CCDS (NCBI)MAGEA5
Cluster EST : UnigeneHs.668021 [ NCBI ]
CGAP (NCI)Hs.668021
Alternative Splicing GalleryENSG00000242520
Gene ExpressionMAGEA5 [ NCBI-GEO ]   MAGEA5 [ EBI - ARRAY_EXPRESS ]   MAGEA5 [ SEEK ]   MAGEA5 [ MEM ]
Gene Expression Viewer (FireBrowse)MAGEA5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4104
GTEX Portal (Tissue expression)MAGEA5
Protein : pattern, domain, 3D structure
UniProt/SwissProtP43359   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP43359  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP43359
Splice isoforms : SwissVarP43359
PhosPhoSitePlusP43359
Domains : Interpro (EBI)MAGE_N    MAGEA4/MAGEA5   
Domain families : Pfam (Sanger)MAGE_N (PF12440)   
Domain families : Pfam (NCBI)pfam12440   
Conserved Domain (NCBI)MAGEA5
DMDM Disease mutations4104
Blocks (Seattle)MAGEA5
SuperfamilyP43359
Human Protein AtlasENSG00000242520
Peptide AtlasP43359
HPRD02277
Protein Interaction databases
DIP (DOE-UCLA)P43359
IntAct (EBI)P43359
FunCoupENSG00000242520
BioGRIDMAGEA5
STRING (EMBL)MAGEA5
ZODIACMAGEA5
Ontologies - Pathways
QuickGOP43359
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkMAGEA5
Atlas of Cancer Signalling NetworkMAGEA5
Wikipedia pathwaysMAGEA5
Orthology - Evolution
OrthoDB4104
GeneTree (enSembl)ENSG00000242520
Phylogenetic Trees/Animal Genes : TreeFamMAGEA5
HOVERGENP43359
HOGENOMP43359
Homologs : HomoloGeneMAGEA5
Homology/Alignments : Family Browser (UCSC)MAGEA5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGEA5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGEA5
dbVarMAGEA5
ClinVarMAGEA5
1000_GenomesMAGEA5 
Exome Variant ServerMAGEA5
ExAC (Exome Aggregation Consortium)MAGEA5 (select the gene name)
Genetic variants : HAPMAP4104
Genomic Variants (DGV)MAGEA5 [DGVbeta]
DECIPHER (Syndromes)X:151282521-151286411  ENSG00000242520
CONAN: Copy Number AnalysisMAGEA5 
Mutations
ICGC Data PortalMAGEA5 
TCGA Data PortalMAGEA5 
Broad Tumor PortalMAGEA5
OASIS PortalMAGEA5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGEA5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAGEA5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch MAGEA5
DgiDB (Drug Gene Interaction Database)MAGEA5
DoCM (Curated mutations)MAGEA5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGEA5 (select a term)
intoGenMAGEA5
Cancer3DMAGEA5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300340   
Orphanet
MedgenMAGEA5
Genetic Testing Registry MAGEA5
NextProtP43359 [Medical]
TSGene4104
GENETestsMAGEA5
Huge Navigator MAGEA5 [HugePedia]
snp3D : Map Gene to Disease4104
BioCentury BCIQMAGEA5
ClinGenMAGEA5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4104
Chemical/Pharm GKB GenePA30549
Clinical trialMAGEA5
Miscellaneous
canSAR (ICR)MAGEA5 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGEA5
EVEXMAGEA5
GoPubMedMAGEA5
iHOPMAGEA5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Nov 18 19:42:44 CET 2016

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