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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome

Donate (in Euros)

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MAGEA5 (melanoma antigen family A, 5)

Identity

Other namesCT1.5
MAGE5
MAGEA4
HGNC (Hugo) MAGEA5
LocusID (NCBI) 4104
Location Xq28
Location_base_pair Starts at 151282521 and ends at 151286411 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MAGEA5   6803
Cards
Entrez_Gene (NCBI)MAGEA5  4104  melanoma antigen family A, 5
GeneCards (Weizmann)MAGEA5
Ensembl hg19 (Hinxton)ENSG00000242520 [Gene_View]  chrX:151282521-151286411 [Contig_View]  MAGEA5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000242520 [Gene_View]  chrX:151282521-151286411 [Contig_View]  MAGEA5 [Vega]
ICGC DataPortalENSG00000242520
cBioPortalMAGEA5
AceView (NCBI)MAGEA5
Genatlas (Paris)MAGEA5
WikiGenes4104
SOURCE (Princeton)MAGEA5
Genomic and cartography
GoldenPath hg19 (UCSC)MAGEA5  -     chrX:151282521-151286411 -  Xq28   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MAGEA5  -     Xq28   [Description]    (hg38-Dec_2013)
EnsemblMAGEA5 - Xq28 [CytoView hg19]  MAGEA5 - Xq28 [CytoView hg38]
Mapping of homologs : NCBIMAGEA5 [Mapview hg19]  MAGEA5 [Mapview hg38]
OMIM300340   
Gene and transcription
Genbank (Entrez)AI200443 AY310324 BC109187
RefSeq transcript (Entrez)NM_021049
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NG_016417 NT_011681 NW_001842414 NW_004929448
Consensus coding sequences : CCDS (NCBI)MAGEA5
Cluster EST : UnigeneHs.668021 [ NCBI ]
CGAP (NCI)Hs.668021
Alternative Splicing : Fast-db (Paris)GSHG0034064
Alternative Splicing GalleryENSG00000242520
Gene ExpressionMAGEA5 [ NCBI-GEO ]     MAGEA5 [ SEEK ]   MAGEA5 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP43359 (Uniprot)
NextProtP43359  [Medical]
With graphics : InterProP43359
Splice isoforms : SwissVarP43359 (Swissvar)
Domains : Interpro (EBI)MAGE    Melanoma_ass_antigen_N   
Related proteins : CluSTrP43359
Domain families : Pfam (Sanger)MAGE_N (PF12440)   
Domain families : Pfam (NCBI)pfam12440   
DMDM Disease mutations4104
Blocks (Seattle)P43359
Human Protein AtlasENSG00000242520
Peptide AtlasP43359
HPRD02277
Protein Interaction databases
DIP (DOE-UCLA)P43359
IntAct (EBI)P43359
FunCoupENSG00000242520
BioGRIDMAGEA5
IntegromeDBMAGEA5
STRING (EMBL)MAGEA5
Ontologies - Pathways
QuickGOP43359
Ontology : AmiGO
Ontology : EGO-EBI
Protein Interaction DatabaseMAGEA5
DoCM (Curated mutations)MAGEA5
Wikipedia pathwaysMAGEA5
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerMAGEA5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGEA5
dbVarMAGEA5
ClinVarMAGEA5
1000_GenomesMAGEA5 
Exome Variant ServerMAGEA5
SNP (GeneSNP Utah)MAGEA5
SNP : HGBaseMAGEA5
Genetic variants : HAPMAPMAGEA5
Genomic Variants (DGV)MAGEA5 [DGVbeta]
Mutations
ICGC Data PortalENSG00000242520 
Somatic Mutations in Cancer : COSMICMAGEA5 
CONAN: Copy Number AnalysisMAGEA5 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)X:151282521-151286411
Mutations and Diseases : HGMDMAGEA5
OMIM300340   
MedgenMAGEA5
NextProtP43359 [Medical]
GENETestsMAGEA5
Disease Genetic AssociationMAGEA5
Huge Navigator MAGEA5 [HugePedia]  MAGEA5 [HugeCancerGEM]
snp3D : Map Gene to Disease4104
DGIdb (Drug Gene Interaction db)MAGEA5
General knowledge
Homologs : HomoloGeneMAGEA5
Homology/Alignments : Family Browser (UCSC)MAGEA5
Phylogenetic Trees/Animal Genes : TreeFamMAGEA5
Chemical/Protein Interactions : CTD4104
Chemical/Pharm GKB GenePA30549
Clinical trialMAGEA5
Cancer Resource (Charite)ENSG00000242520
Other databases
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
CoreMineMAGEA5
GoPubMedMAGEA5
iHOPMAGEA5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 14 17:27:36 CET 2015

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