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MAGEA5 (melanoma antigen family A, 5)

Identity

Other namesCT1.5
MAGE5
MAGEA4
HGNC (Hugo) MAGEA5
LocusID (NCBI) 4104
Location Xq28
Location_base_pair Starts at 151282521 and ends at 151286411 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MAGEA5   6803
Cards
Entrez_Gene (NCBI)MAGEA5  4104  melanoma antigen family A, 5
GeneCards (Weizmann)MAGEA5
Ensembl (Hinxton)ENSG00000242520 [Gene_View]  chrX:151282521-151286411 [Contig_View]  MAGEA5 [Vega]
ICGC DataPortalENSG00000242520
AceView (NCBI)MAGEA5
Genatlas (Paris)MAGEA5
WikiGenes4104
SOURCE (Princeton)NM_021049
Genomic and cartography
GoldenPath (UCSC)MAGEA5  -  Xq28   chrX:151282521-151286411 -  Xq28   [Description]    (hg19-Feb_2009)
EnsemblMAGEA5 - Xq28 [CytoView]
Mapping of homologs : NCBIMAGEA5 [Mapview]
OMIM300340   
Gene and transcription
Genbank (Entrez)AI200443 AY310324 BC109187
RefSeq transcript (Entrez)NM_021049
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NG_016417 NT_011681 NW_001842414 NW_004929448
Consensus coding sequences : CCDS (NCBI)MAGEA5
Cluster EST : UnigeneHs.668021 [ NCBI ]
CGAP (NCI)Hs.668021
Alternative Splicing : Fast-db (Paris)GSHG0034064
Alternative Splicing GalleryENSG00000242520
Gene ExpressionMAGEA5 [ NCBI-GEO ]     MAGEA5 [ SEEK ]   MAGEA5 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP43359 (Uniprot)
NextProtP43359  [Medical]
With graphics : InterProP43359
Splice isoforms : SwissVarP43359 (Swissvar)
Domains : Interpro (EBI)MAGE    Melanoma_ass_antigen_N   
Related proteins : CluSTrP43359
Domain families : Pfam (Sanger)MAGE_N (PF12440)   
Domain families : Pfam (NCBI)pfam12440   
DMDM Disease mutations4104
Blocks (Seattle)P43359
Human Protein AtlasENSG00000242520
Peptide AtlasP43359
HPRD02277
Protein Interaction databases
DIP (DOE-UCLA)P43359
IntAct (EBI)P43359
FunCoupENSG00000242520
BioGRIDMAGEA5
IntegromeDBMAGEA5
STRING (EMBL)MAGEA5
Ontologies - Pathways
QuickGOP43359
Ontology : AmiGO
Ontology : EGO-EBI
Protein Interaction DatabaseMAGEA5
Wikipedia pathwaysMAGEA5
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)MAGEA5
SNP (GeneSNP Utah)MAGEA5
SNP : HGBaseMAGEA5
Genetic variants : HAPMAPMAGEA5
1000_GenomesMAGEA5 
ICGC programENSG00000242520 
CONAN: Copy Number AnalysisMAGEA5 
Somatic Mutations in Cancer : COSMICMAGEA5 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
DECIPHER (Syndromes)X:151282521-151286411
Mutations and Diseases : HGMDMAGEA5
OMIM300340   
MedgenMAGEA5
GENETestsMAGEA5
Disease Genetic AssociationMAGEA5
Huge Navigator MAGEA5 [HugePedia]  MAGEA5 [HugeCancerGEM]
Genomic VariantsMAGEA5  MAGEA5 [DGVbeta]
Exome VariantMAGEA5
dbVarMAGEA5
ClinVarMAGEA5
snp3D : Map Gene to Disease4104
General knowledge
Homologs : HomoloGeneMAGEA5
Homology/Alignments : Family Browser (UCSC)MAGEA5
Phylogenetic Trees/Animal Genes : TreeFamMAGEA5
Chemical/Protein Interactions : CTD4104
Chemical/Pharm GKB GenePA30549
Clinical trialMAGEA5
Cancer Resource (Charite)ENSG00000242520
Other databases
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
CoreMineMAGEA5
GoPubMedMAGEA5
iHOPMAGEA5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Nov 8 17:39:07 CET 2014

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