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MAGEA6 (MAGE family member A6)

Identity

Alias_namesMAGE6
melanoma antigen family A6
Alias_symbol (synonym)CT1.6
Other aliasMAGE-3b
MAGE3B
HGNC (Hugo) MAGEA6
LocusID (NCBI) 4105
Atlas_Id 41249
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 151867232 and ends at 151870825 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAGEA6   6804
Cards
Entrez_Gene (NCBI)MAGEA6  4105  MAGE family member A6
AliasesCT1.6; MAGE-3b; MAGE3B; MAGE6
GeneCards (Weizmann)MAGEA6
Ensembl hg19 (Hinxton)ENSG00000197172 [Gene_View]  chrX:151867232-151870825 [Contig_View]  MAGEA6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000197172 [Gene_View]  chrX:151867232-151870825 [Contig_View]  MAGEA6 [Vega]
ICGC DataPortalENSG00000197172
TCGA cBioPortalMAGEA6
AceView (NCBI)MAGEA6
Genatlas (Paris)MAGEA6
WikiGenes4105
SOURCE (Princeton)MAGEA6
Genetics Home Reference (NIH)MAGEA6
Genomic and cartography
GoldenPath hg19 (UCSC)MAGEA6  -     chrX:151867232-151870825 +  Xq28   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MAGEA6  -     Xq28   [Description]    (hg38-Dec_2013)
EnsemblMAGEA6 - Xq28 [CytoView hg19]  MAGEA6 - Xq28 [CytoView hg38]
Mapping of homologs : NCBIMAGEA6 [Mapview hg19]  MAGEA6 [Mapview hg38]
OMIM300176   
Gene and transcription
Genbank (Entrez)AK289437 BC041599 BC067731 BE542284 BM015284
RefSeq transcript (Entrez)NM_005363 NM_175868
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_011681 NW_004929448
Consensus coding sequences : CCDS (NCBI)MAGEA6
Cluster EST : UnigeneHs.441113 [ NCBI ]
CGAP (NCI)Hs.441113
Alternative Splicing GalleryENSG00000197172
Gene ExpressionMAGEA6 [ NCBI-GEO ]   MAGEA6 [ EBI - ARRAY_EXPRESS ]   MAGEA6 [ SEEK ]   MAGEA6 [ MEM ]
Gene Expression Viewer (FireBrowse)MAGEA6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4105
GTEX Portal (Tissue expression)MAGEA6
Protein : pattern, domain, 3D structure
UniProt/SwissProtP43360   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP43360  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP43360
Splice isoforms : SwissVarP43360
PhosPhoSitePlusP43360
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MAGE_N    MAGEA3/MAGEA6    MHD_dom   
Domain families : Pfam (Sanger)MAGE (PF01454)    MAGE_N (PF12440)   
Domain families : Pfam (NCBI)pfam01454    pfam12440   
Conserved Domain (NCBI)MAGEA6
DMDM Disease mutations4105
Blocks (Seattle)MAGEA6
SuperfamilyP43360
Human Protein AtlasENSG00000197172
Peptide AtlasP43360
HPRD02168
IPIIPI00018068   IPI00930119   IPI00930717   IPI00917703   IPI00640156   IPI00976435   
Protein Interaction databases
DIP (DOE-UCLA)P43360
IntAct (EBI)P43360
FunCoupENSG00000197172
BioGRIDMAGEA6
STRING (EMBL)MAGEA6
ZODIACMAGEA6
Ontologies - Pathways
QuickGOP43360
Ontology : AmiGOmolecular_function  protein binding  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  biological_process  
NDEx NetworkMAGEA6
Atlas of Cancer Signalling NetworkMAGEA6
Wikipedia pathwaysMAGEA6
Orthology - Evolution
OrthoDB4105
GeneTree (enSembl)ENSG00000197172
Phylogenetic Trees/Animal Genes : TreeFamMAGEA6
HOVERGENP43360
HOGENOMP43360
Homologs : HomoloGeneMAGEA6
Homology/Alignments : Family Browser (UCSC)MAGEA6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGEA6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGEA6
dbVarMAGEA6
ClinVarMAGEA6
1000_GenomesMAGEA6 
Exome Variant ServerMAGEA6
ExAC (Exome Aggregation Consortium)MAGEA6 (select the gene name)
Genetic variants : HAPMAP4105
Genomic Variants (DGV)MAGEA6 [DGVbeta]
DECIPHER (Syndromes)X:151867232-151870825  ENSG00000197172
CONAN: Copy Number AnalysisMAGEA6 
Mutations
ICGC Data PortalMAGEA6 
TCGA Data PortalMAGEA6 
Broad Tumor PortalMAGEA6
OASIS PortalMAGEA6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGEA6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAGEA6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MAGEA6
DgiDB (Drug Gene Interaction Database)MAGEA6
DoCM (Curated mutations)MAGEA6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGEA6 (select a term)
intoGenMAGEA6
Cancer3DMAGEA6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300176   
Orphanet
MedgenMAGEA6
Genetic Testing Registry MAGEA6
NextProtP43360 [Medical]
TSGene4105
GENETestsMAGEA6
Huge Navigator MAGEA6 [HugePedia]
snp3D : Map Gene to Disease4105
BioCentury BCIQMAGEA6
ClinGenMAGEA6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4105
Chemical/Pharm GKB GenePA30550
Clinical trialMAGEA6
Miscellaneous
canSAR (ICR)MAGEA6 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGEA6
EVEXMAGEA6
GoPubMedMAGEA6
iHOPMAGEA6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:14:10 CET 2017

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