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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome

Donate (in Euros)

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MAGEA8 (melanoma antigen family A, 8)

Identity

Other namesCT1.8
MAGE8
HGNC (Hugo) MAGEA8
LocusID (NCBI) 4107
Location Xq28
Location_base_pair Starts at 149009941 and ends at 149014609 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MAGEA8   6806
Cards
Entrez_Gene (NCBI)MAGEA8  4107  melanoma antigen family A, 8
GeneCards (Weizmann)MAGEA8
Ensembl hg19 (Hinxton)ENSG00000156009 [Gene_View]  chrX:149009941-149014609 [Contig_View]  MAGEA8 [Vega]
Ensembl hg38 (Hinxton)ENSG00000156009 [Gene_View]  chrX:149009941-149014609 [Contig_View]  MAGEA8 [Vega]
ICGC DataPortalENSG00000156009
cBioPortalMAGEA8
AceView (NCBI)MAGEA8
Genatlas (Paris)MAGEA8
WikiGenes4107
SOURCE (Princeton)MAGEA8
Genomic and cartography
GoldenPath hg19 (UCSC)MAGEA8  -     chrX:149009941-149014609 +  Xq28   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MAGEA8  -     Xq28   [Description]    (hg38-Dec_2013)
EnsemblMAGEA8 - Xq28 [CytoView hg19]  MAGEA8 - Xq28 [CytoView hg38]
Mapping of homologs : NCBIMAGEA8 [Mapview hg19]  MAGEA8 [Mapview hg38]
OMIM300341   
Gene and transcription
Genbank (Entrez)AA045817 AK313943 BC002455 BC012744 BC098120
RefSeq transcript (Entrez)NM_001166400 NM_001166401 NM_005364
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NG_015868 NT_011681 NW_001842413 NW_004929448
Consensus coding sequences : CCDS (NCBI)MAGEA8
Cluster EST : UnigeneHs.522803 [ NCBI ]
CGAP (NCI)Hs.522803
Alternative Splicing : Fast-db (Paris)GSHG0031872
Alternative Splicing GalleryENSG00000156009
Gene ExpressionMAGEA8 [ NCBI-GEO ]     MAGEA8 [ SEEK ]   MAGEA8 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP43361 (Uniprot)
NextProtP43361  [Medical]
With graphics : InterProP43361
Splice isoforms : SwissVarP43361 (Swissvar)
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MAGE    Melanoma_ass_antigen_N   
Related proteins : CluSTrP43361
Domain families : Pfam (Sanger)MAGE (PF01454)    MAGE_N (PF12440)   
Domain families : Pfam (NCBI)pfam01454    pfam12440   
DMDM Disease mutations4107
Blocks (Seattle)P43361
Human Protein AtlasENSG00000156009
Peptide AtlasP43361
HPRD02278
IPIIPI00157174   
Protein Interaction databases
DIP (DOE-UCLA)P43361
IntAct (EBI)P43361
FunCoupENSG00000156009
BioGRIDMAGEA8
IntegromeDBMAGEA8
STRING (EMBL)MAGEA8
Ontologies - Pathways
QuickGOP43361
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
Protein Interaction DatabaseMAGEA8
DoCM (Curated mutations)MAGEA8
Wikipedia pathwaysMAGEA8
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerMAGEA8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGEA8
dbVarMAGEA8
ClinVarMAGEA8
1000_GenomesMAGEA8 
Exome Variant ServerMAGEA8
SNP (GeneSNP Utah)MAGEA8
SNP : HGBaseMAGEA8
Genetic variants : HAPMAPMAGEA8
Genomic Variants (DGV)MAGEA8 [DGVbeta]
Mutations
ICGC Data PortalENSG00000156009 
Somatic Mutations in Cancer : COSMICMAGEA8 
CONAN: Copy Number AnalysisMAGEA8 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)X:149009941-149014609
Mutations and Diseases : HGMDMAGEA8
OMIM300341   
MedgenMAGEA8
NextProtP43361 [Medical]
GENETestsMAGEA8
Disease Genetic AssociationMAGEA8
Huge Navigator MAGEA8 [HugePedia]  MAGEA8 [HugeCancerGEM]
snp3D : Map Gene to Disease4107
DGIdb (Drug Gene Interaction db)MAGEA8
General knowledge
Homologs : HomoloGeneMAGEA8
Homology/Alignments : Family Browser (UCSC)MAGEA8
Phylogenetic Trees/Animal Genes : TreeFamMAGEA8
Chemical/Protein Interactions : CTD4107
Chemical/Pharm GKB GenePA30552
Clinical trialMAGEA8
Cancer Resource (Charite)ENSG00000156009
Other databases
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
CoreMineMAGEA8
GoPubMedMAGEA8
iHOPMAGEA8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 14 17:27:39 CET 2015

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